Detail information of GWHGAAEX013716/evm.TU.scaffold_52.90


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|219849799|ref|YP_002464232.1|8.00E-163pyridoxal biosynthesis lyase PdxS [Chloroflexus aggregans DSM 9485]
KOGKOG16060Stationary phase-induced protein, SOR/SNZ family
nrgi|695001628|ref|XP_009417196.1|0PREDICTED: probable pyridoxal biosynthesis protein PDX1.1 [Musa acuminata subsp. malaccensis]
Swissprottr|Q39963|PDX1_HEVBR0Probable pyridoxal biosynthesis protein PDX1
trEMBLtr|A0A059A6X0|A0A059A6X0_EUCGR0Uncharacterized protein {ECO:0000313|EMBL:KCW49454.1}
TAIRAT5G014100Aldolase-type TIM barrel family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004855798865581562-
Transcript Sequence

Network for GWHGAAEX013716

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01680.16SOR_SNZ252304.80E-113
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06215pdxS, pdx1 Vitamin B6 metabolism map00750

Gene Ontology

GO term OntologyName
GO:0042823Biological Processpyridoxal phosphate biosynthetic process
GO:0042819Biological Processvitamin B6 biosynthetic process
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms228.040
SRR2545915Juvenile tuber110.130
SRP108465SRR5643513five period of Gastrodia elata709.080
SRR5643514five period of Gastrodia elata318.130
SRR5643515five period of Gastrodia elata457.030
SRR5643524five period of Gastrodia elata370.430
SRR5643525five period of Gastrodia elata213.710
SRR5643528five period of Gastrodia elata327.920
SRR5643658five period of Gastrodia elata251.520
SRR5643659five period of Gastrodia elata171.450
SRR5643660five period of Gastrodia elata159.160
SRR5643661five period of Gastrodia elata203.490
SRR5643662five period of Gastrodia elata212.610
SRR5643663five period of Gastrodia elata102.910
SRR5643664five period of Gastrodia elata129.890
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1529.720
SRR6049655Rhizomagastrodiae_C368-T10_good_1636.750
SRR6049656Rhizomagastrodiae_C368-T07_good_1476.490
SRR6049657Rhizomagastrodiae_C368-T07_good_1835.350
SRR6049658Rhizomagastrodiae_C368-T04_good_1867.580
SRR6049659Rhizomagastrodiae_C368-T04_good_11007.290
SRR6049660Rhizomagastrodiae_C368-T01_good_1948.640
SRR6049661Rhizomagastrodiae_C368-T04_good_11103.140
SRR6049662Rhizomagastrodiae_C368-T01_good_1481.220
SRR6049663Rhizomagastrodiae_C368-T01_good_1460.240
SRR6049664Rhizomagastrodiae_C368-T10_good_1431.630
SRR6049665Rhizomagastrodiae_C368-T10_good_1431.630
SRP279888GastroGastrodia elata tuber 182.34
JuvenJuvenile tuber387.74
Mother_GastroMother tuber of Gastrodia elata 305.73
Mother_JuvenMother tuber of Juvenile 273.40