Gene detail

Detail information of GWHGAAEX013718/evm.TU.scaffold_526.3

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|694995283\|ref\|XP_009383179.1\|	PREDICTED: uncharacterized protein LOC103970968 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M0RX80\|M0RX80_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P05220_001}
TAIR	AT1G60560	SWIM zinc finger family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000519	22362	25793	-

Transcript Sequence
>GWHTAAEX013718 CAGAGTACTATGAAACCAACCAAATCCCAAACCAAGGAAACTTCAAACTCAAAATCTTTTTCCTATTATACCTATTAACCCCTTTGTTTATGTTATTTTATTTTATTTTTCTTCTGCCCCATTAGTGTTTACAAACTATGTTGTCTTTATTTGTTGCTATTCTGTTCCAAGGAAATCAAATTCTTACTTTAGTGCTATAGGTTGGTGACATTGCCAATATTGATCTTTTCTATGTCCAGAATCTTGCAGCTCAGTGGTGGCACTCCACACCTTGTTATTTATGTTCTGTTTTCCAGAATGAAGAATTTGAGGTTCATTTCATCAATCTGAATCATCATGAAAGGTCTCACACTGAAATCATAGAATGGGATGTATGCTAAAACAAGATTCAAATTAAGGATGTACACGCAAAAATATTATCCTTATATCCTAGCTAAATCAGTAGCTGTAATAGTTTACATTCCCCATTGGACATAGAGATACTATCCAATGGATGTTAAGGATTCAATAGATGATATCCCAGTTCAGGATCCTCCGGATGAAGAATTTTCCGCTGCTGGTCTAACTTGGACCAAATATGGGACTACGGAGCATCATGTTGTTGATGTAGCTCTTATACCATATGATCGAGTAGAGGCTTTTATAAGTTGAGAAAGCGCTAATGCAGAGTGCCCCACGAGATTTCACATCACACGAAGCCGAAAAAGAGAGGGGAATGGGCTGAAAAGCTACAAAAGTGATGAATATCTGCAACATCGGCTGTGAGTAGTGTACTTCTGTGCCATGCATTTTGATTTTGCATGCTTTTTGTTCATTGTTTGCTAATAATTTTCCTTGTAAGTTATTGGTGTTCTTTCGGTCCTGAGAATTATGGAGAGGGAGGTACCATATTGCCAAGCCAAAAATACAGGCTCAATACTAGAAACTGTGCTGCCCGACCACAATCTATGCGTGGATGCACTTGTCGGTTTTCCGTTAAAAGACTTTATGTTCGGCCATCACTTGCACTGATTATCTATCATGAGAGGCGGCACATTAACAAGTCTGGTTTCATATGTCACGGGCCACTTGACCGAGATGCTCTCGGCCCAAGTGCTAAGAGAATTCCTTACATATGCAGCGAAATCCAACAGCAAACAATGTCCCTGATCTATCTTGGTGTCCCTGAAGAGAAAGTTCTGAAAACGCACCTGGAAGGAGTTCAGCGCTATTGCGGTTCGGATGCAAGAGTTAACAGTCTGGCATCACAGTATGTTCAAAAACTGGGCATGATTGTCAAAAGATCGACTCATGAATTAGACTTGGATGATCAGGCTAGTGTTCGAATGTGGGTTGAAAGGAATAAGAAGTCTGTGTTCTTTTATAGGGATGCTTCAGATGTAGATCCTTTTATTTTGGGAGTACAGACAGAGTGGCAACTGCAGCAGATGATTCGGTTCAGCCATCACAGCCTTCTTGCATGTTATTCCTCATTTGGCATTCACAAACTCAAGTATCCCTTGTACTCACTTCTTGCGTTCGACTCAAAACACCACGCTCTTCCGGTTGCATGGGTTATAACTCGATCTATGACTGAGCGCGATGTTTCAAAATGGATGAGAGCGCTCGTTGATAGAATCTGTTTGGTTGATTCAACTTGGAAGCTCACGGGGTTTATTATTGATGATCCATCGTTGGAGATTGAGCCAATCAGGGATGTATTTTGCTGTCCGGTTCTCTTCTCCTTGTGGCATGTTCGTCGATCGTGGCTCAGGAAAATTATCTGCAAATGCAGCAACATTGAAGTTCAAAGGGAGCTGTTCAAATGTCTTGGGAGAGTTATTTACAGCACCCGGAATGGAATGGACTATATGATTCCCCTTAAAGAACTGTTAACAGATTTTGTCGATCAAACTGCATTCATGAAGTATTTCAAATCATGCTGGGTTCCAAAGATTGAGATGTGGCTTACCACTATGAGGAATCTTCCACTGGCCAGCCTGGAATCATGTGGAGCCATTGAGAGTTATCACCTCAAACTAAAACTCAAAATATATGAAGATTCACAGCTCGATGCTCTAGAACGTGCAGACTGGTTAGTGCACAAGCTCACGATGGAGGTGCATTCCAGTTACTGGTTTGATCTTTATGCAGATGAAAGCGGATCTTACCCAGCAGTAAAAGAAGAGTACATCTCTTCCTCATCATGGCATAGGGCATTGCAGATTCCTGACGATGCCATAACCTTTGATGATAAGTCCCAGCTCTTCGTAAAGGTTGGCAGCCAGAAGGACGGCAACTGCACGCACACGGTATGGAATTCGGGATCGGAATTCGCTTTCTGTGATTGTATGTGGTCGATGCAGGGGAATCTATGCAAGCATGCAATGAAGGCAAGCATGCTTTGTGAACGTGAAGAAGCTCAATCATTGTCGCTGTCTCGCCAAACTTTTTGGCAGATTCTTGTCGATATTTTGGGAAAACCGATGGATGATTCACTTGAACTTGACCAATCTCTTGCTTGGGCAACAAGAATGCGAGATGAGATTCAGAGGCTTGTGGAACTCGTGACATCGAGTGATATCACGGAAGTGATGAACCGACTGCCGCTTAAGTGGGCTGGAAAGAAAGAAAGAACATTTGCAAGCAAGCCTGTAGGGGCCAACACTCTTCTTCGTGCCTTCATAACCAGTGCTGGGAAGAGGAAGAAAGCTTCTAAGAGAAAGAATCGAAAACGTAAACGGATTGGAACTCTTTTGAAATGTCCGCCTCGTTAGGCATTTGCTTTATAATATCTTCTGCTGATTTTCATTTATGATAAATTATTATTATTATTACACACTACATTACCATCCATTTCTTTTCTTTTTAGAGTACAATTTTCTGTTTTTTACTTGAAGCTTCTTGTTTTATTTAATATTCTACGACGGTAAACATAAGGCGAGTTTGTCGAGTTTGATGCAAGTCTTAGCTGATATGCTTTTTTGTTGAGTTTGCCATTTGAAGTTATTTTTCTATTAGCTTCTAGAAACATTTCCTCAAGAAGTGTTAGGTAGGTGTAGCTTTTTAGATTTGTGATGCTGTATGGATGCCCTATTGTTTGCTTATGTTATTTCTATTTTACATGTTTTGTGACTATTTTTATACAACTGTGTTTTTTTACCATTGCAACACAAAATTGGAAAAGCATGATGCAAACTTGGGATCAT

Network for GWHGAAEX013718

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	26.080
SRP064423	SRR2545915	Juvenile tuber	25.510
SRP108465	SRR5643513	five period of Gastrodia elata	40.840
	SRR5643514	five period of Gastrodia elata	43.610
	SRR5643515	five period of Gastrodia elata	40.600
	SRR5643524	five period of Gastrodia elata	41.730
	SRR5643525	five period of Gastrodia elata	53.520
	SRR5643528	five period of Gastrodia elata	50.600
	SRR5643658	five period of Gastrodia elata	54.940
	SRR5643659	five period of Gastrodia elata	35.660
	SRR5643660	five period of Gastrodia elata	41.020
	SRR5643661	five period of Gastrodia elata	38.730
	SRR5643662	five period of Gastrodia elata	47.600
	SRR5643663	five period of Gastrodia elata	45.640
	SRR5643664	five period of Gastrodia elata	45.260
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	34.560
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	35.490
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	32.690
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	35.950
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	21.850
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	22.880
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	25.720
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.640
SRP279888	Gastro	Gastrodia elata tuber	50.35
	Juven	Juvenile tuber	54.21
	Mother_Gastro	Mother tuber of Gastrodia elata	50.52
	Mother_Juven	Mother tuber of Juvenile	44.54