Detail information of GWHGAAEX013724/evm.TU.scaffold_53.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-167 | FOG: PPR repeat |
| nr | gi|743873546|ref|XP_010906852.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Elaeis guineensis] |
| Swissprot | tr|Q9SHZ8|PP168_ARATH | 9.00E-168 | Pentatricopeptide repeat-containing protein At2g22070 |
| trEMBL | tr|B8ATC9|B8ATC9_ORYSI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:EEC77866.1} |
| TAIR | AT2G22070 | 3.00E-167 | pentatricopeptide (PPR) repeat-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000051 | 48666 | 51619 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013724
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12854.6 | PPR_1 | 102 | 131 | 8.60E-09 |
| PF01535.19 | PPR | 138 | 154 | 0.72 |
| PF01535.19 | PPR | 240 | 269 | 0.0069 |
| PF01535.19 | PPR | 271 | 297 | 0.019 |
| PF13041.5 | PPR_2 | 370 | 417 | 9.20E-13 |
| PF01535.19 | PPR | 447 | 473 | 0.0011 |
| PF13041.5 | PPR_2 | 503 | 550 | 3.60E-07 |
| PF13041.5 | PPR_2 | 606 | 654 | 5.10E-10 |
| PF14432.5 | DYW_deaminase | 780 | 894 | 1.90E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 25.180 |
| SRR2545915 | Juvenile tuber | 12.860 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.740 |
| SRR5643514 | five period of Gastrodia elata | 18.450 | |
| SRR5643515 | five period of Gastrodia elata | 17.160 | |
| SRR5643524 | five period of Gastrodia elata | 17.530 | |
| SRR5643525 | five period of Gastrodia elata | 24.180 | |
| SRR5643528 | five period of Gastrodia elata | 23.250 | |
| SRR5643658 | five period of Gastrodia elata | 27.820 | |
| SRR5643659 | five period of Gastrodia elata | 21.870 | |
| SRR5643660 | five period of Gastrodia elata | 24.330 | |
| SRR5643661 | five period of Gastrodia elata | 18.040 | |
| SRR5643662 | five period of Gastrodia elata | 19.110 | |
| SRR5643663 | five period of Gastrodia elata | 22.710 | |
| SRR5643664 | five period of Gastrodia elata | 17.250 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 28.810 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.800 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.970 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.680 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 30.390 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 37.980 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 27.680 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.720 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.780 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.300 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.870 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.870 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.82 |
| Juven | Juvenile tuber | 33.85 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 22.57 | |
| Mother_Juven | Mother tuber of Juvenile | 29.27 |