Gene detail

Detail information of GWHGAAEX013726/evm.TU.scaffold_53.9

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1793	1.00E-158	Uncharacterized conserved protein
nr	gi\|743780678\|ref\|XP_010920574.1\|	0	PREDICTED: protein IWS1 homolog isoform X1 [Elaeis guineensis]
trEMBL	tr\|M0RLN7\|M0RLN7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P26630_001}
TAIR	AT1G32130	1.00E-158	Transcription elongation factor (TFIIS) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000051	140829	154645	+

Transcript Sequence
>GWHTAAEX013726 TGTTATTATGACTTCAACGCGCCTTGAGCTGTTGTATGTTTCAGGTTACCAAAAATAAAACCTCCTGCATCAGGTTGCCTAAAATAAAACCTCCTGTGAACTTACTGCATTAGGTGAAATAACTGCATCCCTGTTCTGTGAATCAATTCAGCACCGCGTATCATATCGGCGACAACCAAACCGACAAGGCGGAGATCGAGTTTGCTTTTATCCGAAAGCTTCTCCTTTGATTAGACTTTCGATTTTCGTTAATATCTTCGACAATCGTTTTTTTGCGCTTTTTTATCTGATCTCTGCCATGGGCTACGAGAACGATCCGTATGCGGATGAGGATGGAGAGCCTCTCATGGATCCCGATGACATGCCTTCCGACAGGGAGCCGTCCACTTACACTGGAAATCAATTCGACGATGAAAGCGACGATGACTGGCGGAGGGAGCGATCGCCTACACCAGCTTTTGATGATGAAAAGATCGGGAAGCCGAAGAAGAGATTGGTCAAGAAGAGCGCCAAGGAAAACTCCTTGGAGGGCAGCGGGAGCCCGGATGAGCAGGCGTTTCGTGGGGATGATTTGAACGATTGGGAAGACGAGGAGCCGGCCAAGAAGAGAAATAAACCATCCTCTGGAAATTCAGGCAGGGAGTCTAGCAGCAAGAAGGAAAAAAAGAAAGTGTTCACCAAGCTCGACCGATCTGCTGAAAAAGCTTCAGCGTCGGGATTAAAGGGTTATGGGGCTGATTCGCCTGGCCATGGAGGAGATCCGGAGATGCAGGAGTTGTGGGACACTATTGCTGGTGGTGATTCAGAGGATGATCGAGATGGTGCTAGAACAGCTTATGATGATGCTTTCATTGATGATACTGGGGTTGAACCAATTGATCGTTTTAATAGTGACAATGAAGCTTCTATTGGGGATGCTCCACAGGCAGAAGAGGATAATGAACTGAATAAGCTTTTTAAGAGTGGTAAAAAGAAGAAGAAAAATGAAAAATCACCTGCTGAACTGGCTATGATTGTTGAAGATCTTATGGCTGAACTTGAAGTTACAGCTGAAGAAGATGCTGAACTGAATAGGCAAAATAAACCAGCTATTAATAAGCTTAGGAAGCTTCCGCTTCTAATAGAAGTTCTTTCCAAGAAGAAACTTCAACTGGAATTTCTAGATCATGGGGTGCTTACACTTTTAAAGAATTGGCTTGAACCCTTACCTGATGGAAGCTTGCCTAACATGAATATTAGAACTGCTATACTGAAGCTACTCTCAGATTTTCCTATAGATTTAGAGCAGTATGATCGGAGAGAACAGCTAAAGAAGAGTGGCCTTGGGAAGGTTATCATGTTTTTGTCAAAATCTGATGAAGAGACCACAGCTAATAGAAAGCTTGCTAAAGAGTTAGTTGATAAATGGAGCCGGCCAATATTTAACAAGAGCACTAGATTTGAAGACATGCGGAGTTATGAAGATGAGAGGATTCCTTACAGAAGGCCTGCCCCAAAGAATCTGAACAAATCTTCTGAAATTGAATCGAGAGATGTTGATCTTGATGAATTTTCCCAGGGGAAAAAGTCCCGCCAAGCTGCTTCTAGACAACATGCATCGCGGCCAGAAGCATTACCATTGGATTTTATTGTTCGCCCACAATCAAAAGTAGACCCAGAAGAAATTAGAGCACGGGCTAAGCAAGTTGTGCAAAATCAAAGGCGTCAAAAGATGAATAAGAAGCTGCAACAGTTGAAAGCACCTAAAAAGAAGCAACTTCAAGCATCAAAGCTCAGTGTGGAGGGCCGTGGCATGATTAAGTACCTATAATCATCGAGGCGAAGATATCCATGTTAAGCAGGGTTAGTGGCGGATGCAGAACGAACGTTTCCTTTCATCATTTATAGCTCAATGATATCTATCTATCTATATGTATGTATGTGTATATATATTATACACAACTTTGGAAAGAATGCTTGCATCGGAAGAATAATTTTTTCGATGCATCATCTTTTTGTGAGATTTTAGGCTGTCACTTCATTCTGTATCATGAGCTTTTTTTATTTTTGAGTTCATTGTAAAATTGTACAAGCTACTTTATTTTTTATTCAGAAACCATATTTATTTGTATGCTTTAGGGCATCAGATTTGTGCATTGTGCTTGCTTTAATTTGCCACATAGTCGATTTATTTTTAATGAATGGAGAGCCATTGTAATGTTGGG

Network for GWHGAAEX013726

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08711.10	Med26	329	374	3.80E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	IWS1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	56.470
SRP064423	SRR2545915	Juvenile tuber	84.510
SRP108465	SRR5643513	five period of Gastrodia elata	85.430
	SRR5643514	five period of Gastrodia elata	79.350
	SRR5643515	five period of Gastrodia elata	101.980
	SRR5643524	five period of Gastrodia elata	86.500
	SRR5643525	five period of Gastrodia elata	89.250
	SRR5643528	five period of Gastrodia elata	80.620
	SRR5643658	five period of Gastrodia elata	91.980
	SRR5643659	five period of Gastrodia elata	103.760
	SRR5643660	five period of Gastrodia elata	102.710
	SRR5643661	five period of Gastrodia elata	98.950
	SRR5643662	five period of Gastrodia elata	103.830
	SRR5643663	five period of Gastrodia elata	98.280
	SRR5643664	five period of Gastrodia elata	101.710
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	78.440
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	71.490
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	93.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	81.060
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	115.080
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	112.410
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	91.370
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	109.070
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	89.610
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	103.110
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	79.430
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	79.430
SRP279888	Gastro	Gastrodia elata tuber	123.07
	Juven	Juvenile tuber	117.68
	Mother_Gastro	Mother tuber of Gastrodia elata	85.28
	Mother_Juven	Mother tuber of Juvenile	114.82