Detail information of GWHGAAEX013732/evm.TU.scaffold_53.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|91778292|ref|YP_553500.1| | 1.00E-31 | putative oxidoreductase [Burkholderia xenovorans LB400] |
| KOG | KOG0143 | 1.00E-115 | Iron/ascorbate family oxidoreductases |
| nr | gi|743800421|ref|XP_010925929.1| | 0 | PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Elaeis guineensis] |
| Swissprot | tr|D4N500|DIOX1_PAPSO | 1.00E-69 | Thebaine 6-O-demethylase |
| trEMBL | tr|M0S9B2|M0S9B2_MUSAM | 5.00E-174 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P19210_001} |
| TAIR | AT4G16330 | 1.00E-115 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000051 | 490070 | 515851 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013732
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14226.5 | DIOX_N | 41 | 146 | 1.40E-20 |
| PF03171.19 | 2OG-FeII_Oxy | 198 | 290 | 2.10E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.180 |
| SRR2545915 | Juvenile tuber | 11.540 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.810 |
| SRR5643514 | five period of Gastrodia elata | 8.750 | |
| SRR5643515 | five period of Gastrodia elata | 9.300 | |
| SRR5643524 | five period of Gastrodia elata | 9.080 | |
| SRR5643525 | five period of Gastrodia elata | 14.750 | |
| SRR5643528 | five period of Gastrodia elata | 15.970 | |
| SRR5643658 | five period of Gastrodia elata | 18.930 | |
| SRR5643659 | five period of Gastrodia elata | 12.360 | |
| SRR5643660 | five period of Gastrodia elata | 12.500 | |
| SRR5643661 | five period of Gastrodia elata | 10.930 | |
| SRR5643662 | five period of Gastrodia elata | 10.850 | |
| SRR5643663 | five period of Gastrodia elata | 15.150 | |
| SRR5643664 | five period of Gastrodia elata | 10.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.350 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.460 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.810 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.530 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.350 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.290 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.86 |
| Juven | Juvenile tuber | 12.01 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.33 | |
| Mother_Juven | Mother tuber of Juvenile | 7.42 |