Detail information of GWHGAAEX013736/evm.TU.scaffold_53.23
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2975 | 3.00E-136 | Translation initiation factor 3, subunit f (eIF-3f) |
| nr | gi|672124058|ref|XP_008785406.1| | 2.17E-171 | PREDICTED: eukaryotic translation initiation factor 3 subunit F [Phoenix dactylifera] |
| Swissprot | tr|O04202|EIF3F_ARATH | 9.00E-137 | Eukaryotic translation initiation factor 3 subunit F {ECO:0000255|HAMAP-Rule:MF_03005} |
| trEMBL | tr|A0A0A0K7P9|A0A0A0K7P9_CUCSA | 1.00E-154 | Uncharacterized protein {ECO:0000313|EMBL:KGN45775.1} |
| TAIR | AT2G39990 | 3.00E-136 | eukaryotic translation initiation factor 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000051 | 632074 | 651587 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013736
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01398.20 | JAB | 20 | 124 | 2.60E-23 |
| PF13012.5 | MitMem_reg | 172 | 278 | 3.70E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | JAMM |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03249 | EIF3F | RNA transport | map03013 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006413 | Biological Process | translational initiation |
| GO:0003743 | Molecular Function | translation initiation factor activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0031369 | Molecular Function | translation initiation factor binding |
| GO:0005852 | Cellular Component | eukaryotic translation initiation factor 3 complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 37.550 |
| SRR2545915 | Juvenile tuber | 39.630 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 50.330 |
| SRR5643514 | five period of Gastrodia elata | 68.300 | |
| SRR5643515 | five period of Gastrodia elata | 50.830 | |
| SRR5643524 | five period of Gastrodia elata | 63.140 | |
| SRR5643525 | five period of Gastrodia elata | 63.450 | |
| SRR5643528 | five period of Gastrodia elata | 72.390 | |
| SRR5643658 | five period of Gastrodia elata | 58.890 | |
| SRR5643659 | five period of Gastrodia elata | 62.810 | |
| SRR5643660 | five period of Gastrodia elata | 58.630 | |
| SRR5643661 | five period of Gastrodia elata | 53.530 | |
| SRR5643662 | five period of Gastrodia elata | 50.160 | |
| SRR5643663 | five period of Gastrodia elata | 53.040 | |
| SRR5643664 | five period of Gastrodia elata | 44.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 46.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 90.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 60.850 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 42.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 41.540 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 38.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 47.600 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 44.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 68.220 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 57.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 89.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 89.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 51.65 |
| Juven | Juvenile tuber | 46.35 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 47.89 | |
| Mother_Juven | Mother tuber of Juvenile | 40.57 |