Gene detail

Detail information of GWHGAAEX013742/evm.TU.scaffold_53.35

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|557694469\|ref\|YP_008797523.1\|	6.00E-39	protein phosphatase [Candidatus Caldiarchaeum subterraneum]
KOG	KOG0374	2.00E-145	Serine/threonine specific protein phosphatase PP1, catalytic subunit
nr	gi\|703089045\|ref\|XP_010093694.1\|	5.88E-153	Serine/threonine-protein phosphatase PP1 [Morus notabilis]
Swissprot	tr\|P48488\|PP1_MEDSV	2.00E-149	Serine/threonine-protein phosphatase PP1
trEMBL	tr\|W9R264\|W9R264_9ROSA	2.00E-153	Serine/threonine-protein phosphatase {ECO:0000256\|RuleBase:RU004273}
trEMBL	tr\|W9R264\|W9R264_9ROSA	4.00E-30	Serine/threonine-protein phosphatase {ECO:0000256\|RuleBase:RU004273}
TAIR	AT4G11240	2.00E-145	Calcineurin-like metallo-phosphoesterase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000051	1254982	1296168	-

Transcript Sequence
>GWHTAAEX013742 AAAAAAGCCGTCCCTCAATTCTTCTCCGAGCCGTTGCTGGTGACTTAAAATCCTCTCAGAAGCGCCCTAACGTCGGGACAAACCACAAGATATAAAGAAGCTCTGTACCTTACCAATAGAAAGGCAACGGAGGAGAAAGCGAACAATCCTTCACCTTACTCTACCTCTCACCGAAGGCTACAAGGTTCTTCTGTATCTAGGATGGCGATGGACGATGCTTTGTTAAACAGCATCATACGGAGGCTGCTGGCTGCGAAGAACGGACGGTCGACGAAGCAGGTGAGCCTCACCGAGGCCGAGATTCGCCAACTCTGCGTTTTCTCTAGGGAGATCTTTCTAAGGCAGCCCAACCTCTTGGAGCTAAAAGCCCCCCTCAAGATATGTGGGGATGTGCATGGGCAGTATTCAGATCTTCTCCGGTTGTTTGAACATGGCGGTTTTCCTCCAGCGGCCAATTACCTGTTCCTTGGGGACTACGTTGATCGCGGAAAACAAAGTATAGAAACGATCTGCCTCCTCCTATCATACAAGATCAAATATCCGAGGAACTTCTTTCTTCTAAGGGGAAACCACGAGTGCGCTTCTATAAATCGTATCTATGGGTTCTATGATGAATGCAAGAGAAGGTTCAATGTTCGTCTCTGGAAGGATTTTACCGAAACCTTCAACTGCATTCCAGTTGCTGCACTGGTTGATGAAAAGATCTTTTGCGTGCACGGGGGATTGTCTCCTAGTTTAAAGCACCTGGATCAGATTGAGAAAATTGCTAGACCAGCTGAGGTGCCCGATCAGGGTCTTCTTTGTGATCTCTTATGGGCTGATCCTGACAAAGGTGTTCAAGGGTGGGGGCAGAATGAAAGGGGCGTGTCTTGTACGTTTGGGCCTGACAAAGTTACCCAATTCCTTCAAAAGCATGATTTGGACCTTATCTGTCGAGCTCATCAGGTCACTTTAACATATCTGCTTCTTATGGAATTGAGCTGTGTTCGATCGAATGTATTACTATCTACTACTAATAAAGGCCATTTAAAGTTACCCGCCGGATGTAGTGGCACATACGACCGGAAATTGCTAAAATTTTTAGTTCAATTGATCAGGTTTAATGGAATATCGTCACTAAATAACTGCATTCATCAGGTTGTTGAAGATGGTTATGAGTTCTTTGCATGCAGACAGCTGGTTACTATATTTTCCGCACCGAATTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGCATAGATGATACCTTGACATGTTCATTTCAGATCCTAAAGCCTGTAGACAAGAAAGTACTGCCTGGATTTGGGAAAGGCATGATGAAACCAGGAACGCCGCCAAGAAAGGCTTAAAATGGTTGGCTACTACATCTATATTCTTTTCAACGGCTCGCTGCAAATGAAAGCTGAATCTAAAGCAAACCAGTTACTGAATACTTTTTACATTTCAATAAATGCTTTGAGGAAATCTCCAGTTTCTGTAAAGTTAAGTAGGAAGTGTTGCAAGTTATTTATGTTATTAAGTATGCTAAAAAGTATGTATATGTTTATTTTGATAGAAGCAATTGCTTGAGAGATGCTTCTATACTTAATTGCTTTAAAATTTATTATGTAATATTGTTATTGTCTGGAAGTCTATGTTTTTCATGAAGTCAAAG

Network for GWHGAAEX013742

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16891.4	STPPase_N	8	54	1.10E-18
PF00149.27	Metallophos	59	248	1.90E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06269	PPP1C	mRNA surveillance pathway	map03015
		Hippo signaling pathway	map04390
		cAMP signaling pathway	map04024
		cGMP-PKG signaling pathway	map04022
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Cellular senescence	map04218
		Focal adhesion	map04510
		Regulation of actin cytoskeleton	map04810
		Platelet activation	map04611
		Insulin signaling pathway	map04910
		Oxytocin signaling pathway	map04921
		Adrenergic signaling in cardiomyocytes	map04261
		Vascular smooth muscle contraction	map04270
		Dopaminergic synapse	map04728
		Long-term potentiation	map04720
		Inflammatory mediator regulation of TRP channels	map04750

Gene Ontology

GO term	Ontology	Name
GO:0016787	Molecular Function	hydrolase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.370
SRP064423	SRR2545915	Juvenile tuber	4.500
SRP108465	SRR5643513	five period of Gastrodia elata	5.990
	SRR5643514	five period of Gastrodia elata	7.960
	SRR5643515	five period of Gastrodia elata	5.080
	SRR5643524	five period of Gastrodia elata	6.780
	SRR5643525	five period of Gastrodia elata	32.660
	SRR5643528	five period of Gastrodia elata	22.250
	SRR5643658	five period of Gastrodia elata	27.210
	SRR5643659	five period of Gastrodia elata	3.740
	SRR5643660	five period of Gastrodia elata	3.510
	SRR5643661	five period of Gastrodia elata	3.440
	SRR5643662	five period of Gastrodia elata	5.370
	SRR5643663	five period of Gastrodia elata	2.920
	SRR5643664	five period of Gastrodia elata	5.790
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.300
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.170
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.650
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.820
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.870
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.050
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.470
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.470
SRP279888	Gastro	Gastrodia elata tuber	6.01
	Juven	Juvenile tuber	5.30
	Mother_Gastro	Mother tuber of Gastrodia elata	7.67
	Mother_Juven	Mother tuber of Juvenile	2.23