Detail information of GWHGAAEX013748/evm.TU.scaffold_53.43


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17921.00E-85Reticulon
nrgi|743770957|ref|XP_010915765.1|1.51E-106PREDICTED: reticulon-like protein B2 [Elaeis guineensis]
Swissprottr|O82352|RTNLE_ARATH3.00E-86Reticulon-like protein B5
trEMBLtr|B3TLN1|B3TLN1_ELAGV2.00E-108Reticulon-like protein {ECO:0000256|RuleBase:RU210713}
TAIRAT2G461701.00E-85Reticulon family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005115141071534640+
Transcript Sequence

Network for GWHGAAEX013748

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02453.16Reticulon1322871.80E-50
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms60.720
SRR2545915Juvenile tuber66.320
SRP108465SRR5643513five period of Gastrodia elata29.740
SRR5643514five period of Gastrodia elata37.790
SRR5643515five period of Gastrodia elata34.000
SRR5643524five period of Gastrodia elata36.620
SRR5643525five period of Gastrodia elata40.600
SRR5643528five period of Gastrodia elata38.460
SRR5643658five period of Gastrodia elata38.030
SRR5643659five period of Gastrodia elata41.170
SRR5643660five period of Gastrodia elata43.630
SRR5643661five period of Gastrodia elata47.580
SRR5643662five period of Gastrodia elata41.490
SRR5643663five period of Gastrodia elata41.660
SRR5643664five period of Gastrodia elata40.080
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_124.600
SRR6049655Rhizomagastrodiae_C368-T10_good_156.050
SRR6049656Rhizomagastrodiae_C368-T07_good_126.100
SRR6049657Rhizomagastrodiae_C368-T07_good_125.470
SRR6049658Rhizomagastrodiae_C368-T04_good_121.050
SRR6049659Rhizomagastrodiae_C368-T04_good_125.800
SRR6049660Rhizomagastrodiae_C368-T01_good_124.190
SRR6049661Rhizomagastrodiae_C368-T04_good_122.710
SRR6049662Rhizomagastrodiae_C368-T01_good_129.180
SRR6049663Rhizomagastrodiae_C368-T01_good_121.880
SRR6049664Rhizomagastrodiae_C368-T10_good_129.600
SRR6049665Rhizomagastrodiae_C368-T10_good_129.600
SRP279888GastroGastrodia elata tuber 35.74
JuvenJuvenile tuber33.56
Mother_GastroMother tuber of Gastrodia elata 30.31
Mother_JuvenMother tuber of Juvenile 38.14