Detail information of GWHGAAEX013751/evm.TU.scaffold_53.49


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|57641421|ref|YP_183899.1|1.00E-128signal recognition particle protein Srp54 [Thermococcus kodakarensis KOD1]
KOGKOG07800Signal recognition particle, subunit Srp54
nrgi|743885555|ref|XP_010909951.1|0PREDICTED: signal recognition particle 54 kDa protein 2 [Elaeis guineensis]
Swissprottr|P49972|SR542_SOLLC0Signal recognition particle 54 kDa protein 2
trEMBLtr|A0A061G8Z1|A0A061G8Z1_THECC0Signal recognition particle, SRP54 subunit protein {ECO:0000313|EMBL:EOY25893.1}
TAIRAT1G489000Signal recognition particle, SRP54 subunit protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005118320171872397+
Transcript Sequence

Network for GWHGAAEX013751

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02881.18SRP54_N6832.60E-14
PF00448.21SRP541022962.00E-76
PF02978.18SRP_SPB3284273.10E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03106SRP54, ffh Protein export map03060
Bacterial secretion systemmap03070
Quorum sensingmap02024

Gene Ontology

GO term OntologyName
GO:0006614Biological ProcessSRP-dependent cotranslational protein targeting to membrane
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding
GO:0008312Molecular Function7S RNA binding
GO:0048500Cellular Componentsignal recognition particle

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms27.660
SRR2545915Juvenile tuber30.340
SRP108465SRR5643513five period of Gastrodia elata32.650
SRR5643514five period of Gastrodia elata31.310
SRR5643515five period of Gastrodia elata30.440
SRR5643524five period of Gastrodia elata34.880
SRR5643525five period of Gastrodia elata26.380
SRR5643528five period of Gastrodia elata24.560
SRR5643658five period of Gastrodia elata26.860
SRR5643659five period of Gastrodia elata29.090
SRR5643660five period of Gastrodia elata31.140
SRR5643661five period of Gastrodia elata30.260
SRR5643662five period of Gastrodia elata27.740
SRR5643663five period of Gastrodia elata29.460
SRR5643664five period of Gastrodia elata26.950
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_129.230
SRR6049655Rhizomagastrodiae_C368-T10_good_117.480
SRR6049656Rhizomagastrodiae_C368-T07_good_131.010
SRR6049657Rhizomagastrodiae_C368-T07_good_126.740
SRR6049658Rhizomagastrodiae_C368-T04_good_131.090
SRR6049659Rhizomagastrodiae_C368-T04_good_127.140
SRR6049660Rhizomagastrodiae_C368-T01_good_131.590
SRR6049661Rhizomagastrodiae_C368-T04_good_130.580
SRR6049662Rhizomagastrodiae_C368-T01_good_137.380
SRR6049663Rhizomagastrodiae_C368-T01_good_134.870
SRR6049664Rhizomagastrodiae_C368-T10_good_132.700
SRR6049665Rhizomagastrodiae_C368-T10_good_132.700
SRP279888GastroGastrodia elata tuber 27.60
JuvenJuvenile tuber31.08
Mother_GastroMother tuber of Gastrodia elata 35.58
Mother_JuvenMother tuber of Juvenile 35.03