Detail information of GWHGAAEX013754/evm.TU.scaffold_53.55
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|108804700|ref|YP_644637.1| | 1.00E-74 | major facilitator transporter [Rubrobacter xylanophilus DSM 9941] |
| KOG | KOG0253 | 0 | Synaptic vesicle transporter SV2 (major facilitator superfamily) |
| nr | gi|514816573|ref|XP_004983024.1| | 0 | PREDICTED: organic cation/carnitine transporter 7-like [Setaria italica] |
| Swissprot | tr|Q940M4|OCT7_ARATH | 0 | Organic cation/carnitine transporter 7 |
| trEMBL | tr|K4A922|K4A922_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si035378m} |
| TAIR | AT3G13050 | 0 | Major facilitator superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000051 | 2181066 | 2216589 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013754
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00083.23 | Sugar_tr | 62 | 224 | 5.70E-32 |
| PF07690.15 | MFS_1 | 342 | 481 | 3.50E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.840 |
| SRR2545915 | Juvenile tuber | 10.500 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.550 |
| SRR5643514 | five period of Gastrodia elata | 10.390 | |
| SRR5643515 | five period of Gastrodia elata | 10.780 | |
| SRR5643524 | five period of Gastrodia elata | 10.180 | |
| SRR5643525 | five period of Gastrodia elata | 15.940 | |
| SRR5643528 | five period of Gastrodia elata | 12.790 | |
| SRR5643658 | five period of Gastrodia elata | 17.850 | |
| SRR5643659 | five period of Gastrodia elata | 12.450 | |
| SRR5643660 | five period of Gastrodia elata | 12.160 | |
| SRR5643661 | five period of Gastrodia elata | 9.830 | |
| SRR5643662 | five period of Gastrodia elata | 10.960 | |
| SRR5643663 | five period of Gastrodia elata | 12.970 | |
| SRR5643664 | five period of Gastrodia elata | 9.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.410 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.870 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 24.240 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.890 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 21.090 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.100 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.290 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.880 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.880 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.63 |
| Juven | Juvenile tuber | 11.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.88 | |
| Mother_Juven | Mother tuber of Juvenile | 11.60 |