Gene detail

Detail information of GWHGAAEX013755/evm.TU.scaffold_53.56

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2068	6.00E-47	MOT2 transcription factor
nr	gi\|672158758\|ref\|XP_008799123.1\|	1.63E-75	PREDICTED: uncharacterized protein LOC103713857 [Phoenix dactylifera]
trEMBL	tr\|M0SKW9\|M0SKW9_MUSAM	2.00E-70	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P04020_001}
TAIR	AT5G62910	6.00E-47	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000051	2324226	2326180	+

Transcript Sequence
>GWHTAAEX013755 GTTTTCGGGGTCAGTTTCGTATATCCGTCCCCATAAATACAAAATCCCCATTGATTTTTTCTTTCCTCCAATTGCAAAGCTCCAGCGGAAAGTCCGAACTCCGAAGCTGCGCAGCGCGCTGTCCTTTTTTTGCTATCCGTTTCGCTAAACAATCGCATCGTCTGAACAATTCTCTTGCGGCCTCTCATTCCTCGCCAGTTTAGGGTTTTCTTGGGAGTGATATACTTGAGAGGGATTTTTGGATTGAGGGAAGATGGGCTACGATGCGATGGCGAACAATGTCTCCGTGCCGGCCATCTCGAGGGATTTTGGGAAGAAGAAGAAGGTGAACAGGTCGGCAAAGATGAAGCAGTGCAAGCTCGATGCTCGGCGGGAGCAATGGCTCTCGCAAGTGAAGAATAAGGGCTGTATGAACAGGAGCACAGAGAGCTCACAAACTTCGCCTTCTCACTCCAAAATGAGTCTTCCAAGTTCGGGTCAGGGTGTGCTGGGTAGTAGGCCTAGGAATATGGAGCCGCTCATTGAGATGGAGCAGGATAGATTGGAACTTCAGGACAGCGGCTTGGATTCACCTGTTCAGAGCCCCGTCCCGGGTACAAGTATGCAGAGAAAAGAGTTCTCCAGCACCAGCGGCAGTAGCGGGAGCAGTGTTGGGTCGTGCTCTAGAAGTGTCAGCGATGCAGAAGAGGACGGACAGGAAGAGGATAAGGGAGAAGATAAAGGTGGGTTCGATGATTGGGAAGCTGTGGCTGACGCTCTATCTGCTGTTGGAACTCACAATCGGACTAATTCTGATTCATTGAAGACAGTTGTAGATTCCAAGATGACTGGAGTTCACCGTAGTGATGCTAGGTTGTTTGTTGGGTCATTGAAGTCAGATGCCAACCCGGTAATCCCTAGAGCATGGAAAGCAGATGATACTGCGCGTCCTCAGTGCTTGCCGAATTTATCAAAACAACGTAGCTTTCCACTGAATATAGAGCGCCATTTTACTGTCTCAGGGTGGCATCATCAGGCGCCCTTTGCATGTCCCATTTGTGTGGAAGATTTTGATCTCACAGACTCAAGTTTTTTCCCATGTTCTTGTGGTTTTCGTATATGTCTTTTCTGTCACAAGAAAATTTTGGAGGAGGGTGATGGTAGATGCCCTGGATGCAGGACAAAATATGATAGGGTGGCATCATGCATGGAGAACAGCCCTACTAGAGCAGCGTTATCGCTGCCATGGCGCTTCTCTCGCTCTAGTAGCATGAATTCAAGATCTTGAAAATAGGGAGGTTGTGTTATAGCCTTTCCCTTTTTTTTGACATTCATGCAGCATACTATGGTGGTGTCTCATGATTCCCAGACATTTTGCACACTTTGTTTTATGCATTAAGAAAAAATGTGAATATAGCATCGTTATGAAACCCTTTTGACTATATCAGAGTTTTAGAAACTTACTATGCATTAGATTATTGCATTGTATCAATGGGTTAGGAAATATTTAATGTGAATATATATGCAGCTGTGAACTTTACACATTGAAATCTACTTTATGGTACTTATTATCTTATATATGATTTATTTATGTTGTATATTCTTAAGTTAGCTCTCTACACATAAGAATAATGATATAATTATCTGTGGAAATTCCACTATTGCATTTAAATTATTATGAACACATTGTTATTGTA

Network for GWHGAAEX013755

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14570.5	zf-RING_4	259	306	2.50E-20

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	57.020
SRP064423	SRR2545915	Juvenile tuber	51.870
SRP108465	SRR5643513	five period of Gastrodia elata	31.210
	SRR5643514	five period of Gastrodia elata	33.880
	SRR5643515	five period of Gastrodia elata	33.140
	SRR5643524	five period of Gastrodia elata	33.290
	SRR5643525	five period of Gastrodia elata	35.710
	SRR5643528	five period of Gastrodia elata	31.640
	SRR5643658	five period of Gastrodia elata	36.000
	SRR5643659	five period of Gastrodia elata	29.250
	SRR5643660	five period of Gastrodia elata	33.500
	SRR5643661	five period of Gastrodia elata	27.350
	SRR5643662	five period of Gastrodia elata	42.030
	SRR5643663	five period of Gastrodia elata	35.560
	SRR5643664	five period of Gastrodia elata	41.930
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	37.620
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.840
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	31.240
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	48.110
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.320
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	53.800
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	41.980
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	39.530
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.680
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	30.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.610
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.610
SRP279888	Gastro	Gastrodia elata tuber	28.13
	Juven	Juvenile tuber	28.82
	Mother_Gastro	Mother tuber of Gastrodia elata	38.43
	Mother_Juven	Mother tuber of Juvenile	37.62