Detail information of GWHGAAEX013758/evm.TU.scaffold_53.63
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0773 | 5.00E-114 | Transcription factor MEIS1 and related HOX domain proteins |
| nr | gi|371767734|gb|AEX56222.1| | 1.18E-165 | knotted-like 1 protein [Dactylorhiza fuchsii] |
| Swissprot | tr|P46608|HSBH1_SOYBN | 5.00E-126 | Homeobox protein SBH1 |
| trEMBL | tr|H2EYP6|H2EYP6_9ASPA | 4.00E-166 | Knotted-like 1 protein {ECO:0000313|EMBL:AEX56222.1} |
| TAIR | AT1G62360 | 5.00E-114 | KNOX/ELK homeobox transcription factor |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000051 | 2589249 | 2592520 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013758
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03790.12 | KNOX1 | 45 | 84 | 1.00E-20 |
| PF03791.12 | KNOX2 | 104 | 148 | 1.60E-20 |
| PF03789.12 | ELK | 183 | 204 | 1.80E-10 |
| PF05920.10 | Homeobox_KN | 223 | 262 | 6.70E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB-KNOX |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 82.360 |
| SRR2545915 | Juvenile tuber | 29.600 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.490 |
| SRR5643514 | five period of Gastrodia elata | 10.010 | |
| SRR5643515 | five period of Gastrodia elata | 12.590 | |
| SRR5643524 | five period of Gastrodia elata | 8.660 | |
| SRR5643525 | five period of Gastrodia elata | 45.440 | |
| SRR5643528 | five period of Gastrodia elata | 13.290 | |
| SRR5643658 | five period of Gastrodia elata | 29.440 | |
| SRR5643659 | five period of Gastrodia elata | 42.360 | |
| SRR5643660 | five period of Gastrodia elata | 47.250 | |
| SRR5643661 | five period of Gastrodia elata | 27.380 | |
| SRR5643662 | five period of Gastrodia elata | 11.420 | |
| SRR5643663 | five period of Gastrodia elata | 43.250 | |
| SRR5643664 | five period of Gastrodia elata | 14.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 52.910 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 57.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 90.910 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 103.320 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 285.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 304.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 160.200 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 322.910 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 88.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 147.100 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 69.260 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 69.260 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.20 |
| Juven | Juvenile tuber | 23.70 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.65 | |
| Mother_Juven | Mother tuber of Juvenile | 8.06 |