Detail information of GWHGAAEX013765/evm.TU.scaffold_53.81
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1677 | 1.00E-87 | CCCH-type Zn-finger protein |
| nr | gi|719989251|ref|XP_010252578.1| | 7.75E-152 | PREDICTED: zinc finger CCCH domain-containing protein 3 [Nelumbo nucifera] |
| Swissprot | tr|Q2R4J4|C3H63_ORYSJ | 3.00E-90 | Zinc finger CCCH domain-containing protein 63 |
| trEMBL | tr|M0SII7|M0SII7_MUSAM | 6.00E-141 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P28210_001} |
| TAIR | AT1G04990 | 1.00E-87 | Zinc finger C-x8-C-x5-C-x3-H type family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000051 | 3493072 | 3537013 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013765
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00642.23 | zf-CCCH | 53 | 77 | 5.40E-08 |
| PF00642.23 | zf-CCCH | 96 | 120 | 1.80E-07 |
| PF00642.23 | zf-CCCH | 141 | 165 | 9.70E-10 |
| PF00642.23 | zf-CCCH | 282 | 307 | 5.60E-10 |
| PF00642.23 | zf-CCCH | 328 | 352 | 6.90E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 23.120 |
| SRR2545915 | Juvenile tuber | 24.500 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 40.210 |
| SRR5643514 | five period of Gastrodia elata | 28.230 | |
| SRR5643515 | five period of Gastrodia elata | 40.410 | |
| SRR5643524 | five period of Gastrodia elata | 34.320 | |
| SRR5643525 | five period of Gastrodia elata | 35.270 | |
| SRR5643528 | five period of Gastrodia elata | 54.870 | |
| SRR5643658 | five period of Gastrodia elata | 30.870 | |
| SRR5643659 | five period of Gastrodia elata | 46.590 | |
| SRR5643660 | five period of Gastrodia elata | 44.550 | |
| SRR5643661 | five period of Gastrodia elata | 49.800 | |
| SRR5643662 | five period of Gastrodia elata | 53.440 | |
| SRR5643663 | five period of Gastrodia elata | 52.650 | |
| SRR5643664 | five period of Gastrodia elata | 38.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.160 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 34.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 24.650 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.280 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.240 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.870 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.210 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 29.310 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 29.310 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 32.06 |
| Juven | Juvenile tuber | 37.85 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 41.13 | |
| Mother_Juven | Mother tuber of Juvenile | 50.04 |