Gene detail

Detail information of GWHGAAEX013766/evm.TU.scaffold_53.84

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1041	Translation initiation factor 2C (eIF-2C) and related proteins
nr	gi\|743861308\|ref\|XP_010943243.1\|	PREDICTED: protein argonaute 16-like [Elaeis guineensis]
Swissprot	tr\|Q6YSJ5\|AGO16_ORYSJ	Protein argonaute 16
trEMBL	tr\|A0A067K3M5\|A0A067K3M5_JATCU	Protein argonaute {ECO:0000256\|RuleBase:RU361178}
TAIR	AT5G21150	Argonaute family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000051	3669061	3722711	-

Transcript Sequence
>GWHTAAEX013766 CCTAGCTTTAGTAACAAAAGTTAATTAAACGGCCTCAAAATAGACAGTGTGCTGAGAAATGGAGAGCCCTAATTCTCCTTCCTAATTCGACTTTCTCCGGCGTCTGCCTCCTCCACCTACTCAATGGACTTCTCTCGGCGTGCGGCGTTTATGGCCTAATATCAGTATTTTCTTCCTTCCTGTCCCAACCTCGATTCCTCTCAGCCATGCGGCGTACGGCCTTTTTGTCCGGCGTGGAACCTATTTAAAGGATATACATTGGGGCAGTGCTATCAAGCAGGATTTTGGGGCAGTTATATCAGAGCCCAAACTAAGGGAAGGAAAGAGAAAGCGTCGATTTGGAAGGCGAAGCATTGACATTGTTGAATGGATTCTGATTTTTCTGCAAAAGATCTGGTGATATCACCGGTTCTCCTCCTTCCAGTACCACCAGCTAAAACTCCAAGAGATGAAAGTTTATCGCTGCCACCTTCCCATATTGTACCACCAAGTGCAATTCCTGAGGTGGTTAATTCTGACAAAGAGAAGCGAACTGCTGTGGCCAGACCTAGTTTTGGAAGTGAAGGCCAGCACATCCAACTTCTTACAAATCACTTCACAGTTAGCCTCAAGGAACAGGATCAATTTTTTTATAGATACAATATTTCTATAAAATCTCTTGATAATGTTGCAGTTGATGGAAAGGGTATTGGAAAAAAAGTCATGGACAGGCTTTATCAAACTTATAGCTCAGAACTTGGTGGAAAACAATTTGCATATGATGGGGATAACAGCCTGTTCACTGTTGGGTCTCTTCCTCAGAATAATCTTGATTTTATTGTAGTTTTGGAAGAGTCAATTAGAGTTCCTTGTGGAGGATTAGGCAGTGATAGCCCAAAAACCAACACTCGCAAGCTTTCCAAGCACTCATTTACTCCGAAGACACTCAATGTTCAGATAAGGTATGCAAATAAAATCCCATTAAGCGCAAATTCACTGTTGTATGGGGGAAGTCAGATGGAGTATACACAAGATGTTGTAAGAGTTCTTGACCTTATTCTGAGGCAGCAGCAGGCAAGAAGGGGATGCTTGCTTGTAAGGCAATCTTATTTTGATGGCAATTCTGCAAACTTTATTGATTTGGGTGGTGGTGTCTCTGGTTGCCAAGGATTTCATTCCGGCTTTCGCACGACCCATGGTGGCCTATCCTTAAATTTGGATGTTTCTACTACAGTAATTTTAAAACCTGGTCCAGTTATTGATTTTTTAATTGCAAATCAAAATGTTCGGAATGCTAAAGAAATTGACTGGGCCAAGGCTAAAAGAACTCTCAAAAATATGAGGGTCAGAACTGTACATACGAACCTGGAATTTAAGATCACAGGTGTGAGTCAACTTCCTTGTAGCCAACAAACATTCTCAATGAAAGGTAAAAATAATGATGAGAAGGATCTTCCAGTTGAAGTTACTGTTTTCAATTATTTTAAAGAGAAAGGTATTGAACTGACATGGTCATCTTCTCTGCCCTGTCTTGTTGCTGGAAAGTCAAAGTGCATCAACTACCTTCCTATTGAGCTATGCAATCTTACATCTTTACAACGGTATACGAAGGCACTATCTCCGCAGCTGAGAGCATCGCTGGCTGAAAAGTTTCGACAGAAGCCACAGGAACGACTCACAGCTATCGTTAATGCCTTTCAAAAAAATCAGTATAATGATGACCCGTTGATTTCTTCTTGTGGGATGACAATTGAAAAGCAGTTAGCCAAGATCGATGGCCGTGTCCTTAAAGCTCCGACACTGAGGATTGGTAACGAGGAAGACTGTTTTCCTAAGAATGGTCGTTGGAGCTTCACTAACAAGAAGCTGTTGCAAGCTGTACAGATTGAACGCTGGGCAATTGTAAATTTTTCAGCACGATGTGATCTAAGCCACCTTTCCCGTGAAATGATTAATTGTGCCAGGAACAAAGGAATTATCATTAATCGTCCATTCACAATTATTGAGGAAAACCACCAACATGTTCGATTGAGGCCTGAAACAAGAGTTGAAAAAATATTTGAAGAGGTTGTAAAAAGACTTCCTTGTCCACCGCAGCTTCTCTTGTGTGTTCTTCCAGAAAAGAACTCTGCTATTTATGGGCCGTGGAAGAAGAAAAATCTTCATGAAATGGGTACAGTTACCCAATGTATTTCTCCCACAAAAATCACAGACCATTACTTGATTAATGTTCTCCTAAAGATCAACACTAAGCTTGGTGGTATAAATTCTCTTCTTGCGGTCGAAGCAAATCCAAGTATTCCTTTAGTTACAGATGTTCCTACCATGATTGTGGGAATGAATGTTTCCCATGGATCTGCAGGGCTTGTTGATGCCCCATCTGTTGCAGCAGCAGTTGGTTCTAGAAATTGGCCGCTAATTTCTAGATACAGTGCATCAGTGAGAACACAGTCTGCAAAGCAAGAAACGATAAACTCTTTGTTCAAGCCTCTTCCAAATGGCGAAGATGATGGAATGATGAGGGATCTGTTGCTTGATTTCTATGTTTCTAGTGATTGCAGAAAACCTGAACAGATTATCATTTTCAGGGATGGTGTAAGTGAATCAAAGTTCAATGATGTCCTGAATATCGAGCTGGATCAAGTTATCAAGGCATTTCAACATTTAGGTGAAGGGCCACTTCCAAGCTTCACTGTAATTATAGCCCGGAAGAAACATCATACTAAACTTTTCCATTCTAATTCTTCTGAAAATGTTCCTCCTGGTACTATTGTGGACACAAAGATTGTTCATCCTAGAAACTACGACTTTTACATGTGCTCTCATGCTGGGACGATTGGTACCTCAAGGCCAACACATTACCATGTGCTTCTTGATGAGATAGGCTTCAATTCAGATGATCTTCAGAATCTTGTACATTCACTCTCTTATGTATATCAGAGGAGTACAACTTCAATATCTGATGTGGCCCCAATTCGCTATGCACGCTTAGCTGCACTTCAAATGTCTCAGTGTTTCAAATTTGAGGATTTGTCAGAGGTATCCACTCAAGATGGTAAACATGAGAACTCTGTAATTCCAGAGATGCCTAGATTGCATGAAGATGTGCGCGAGTCTATGTTCTTCTGCTAATATAAATTCGAGCATATTTTATATGAAGGGTTAAAGAAAAATTGGAAATCTGAATGGAGATTCATTATGGCATGCCTTTTCAAATTGGAAGAATTTTGCAAGTGCATTTTTATGCAAAAGCCTATTTAACAGGTATTTGACAACTGTGCTTTCTCTGCATCAAGACTTTCTTACATTTGACTAGTCACATCATAGAAGGTTACTAATGGCATTTTGAGGATATAACGTTATTAGACTTAAGTTTGTGTGCCAGAAGAAAGCTGCCATTTTATTCTATGTATTCAGTAGTTTTGAGATTTATTCAACTCAGATGCCATATTGAGATCTATCTTCCAATGTAATGACATTGATATTTGTAAGAGATCAAGGAGTGTGACTGCAGATTAATTGAATAGAACAGGTTCACGGTGCCCCTTATTAAATTCGGAGTTCTTGTTTTA

Network for GWHGAAEX013766

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16486.4	ArgoN	69	225	3.50E-23
PF08699.9	ArgoL1	237	284	7.20E-12
PF02170.21	PAZ	291	414	6.30E-22
PF16488.4	ArgoL2	428	473	1.40E-13
PF02171.16	Piwi	572	875	2.50E-93

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11593	ELF2C, AGO	Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.470
SRP064423	SRR2545915	Juvenile tuber	27.950
SRP108465	SRR5643513	five period of Gastrodia elata	13.760
	SRR5643514	five period of Gastrodia elata	15.920
	SRR5643515	five period of Gastrodia elata	14.790
	SRR5643524	five period of Gastrodia elata	16.340
	SRR5643525	five period of Gastrodia elata	11.110
	SRR5643528	five period of Gastrodia elata	8.650
	SRR5643658	five period of Gastrodia elata	18.080
	SRR5643659	five period of Gastrodia elata	16.580
	SRR5643660	five period of Gastrodia elata	16.930
	SRR5643661	five period of Gastrodia elata	13.820
	SRR5643662	five period of Gastrodia elata	12.240
	SRR5643663	five period of Gastrodia elata	14.030
	SRR5643664	five period of Gastrodia elata	13.180
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.940
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.380
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.720
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.450
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.990
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.860
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	17.880
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.210
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.210
SRP279888	Gastro	Gastrodia elata tuber	16.61
	Juven	Juvenile tuber	23.39
	Mother_Gastro	Mother tuber of Gastrodia elata	10.47
	Mother_Juven	Mother tuber of Juvenile	13.03