Detail information of GWHGAAEX013767/evm.TU.scaffold_53.86


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|734319466|gb|KHN03506.1|1.82E-26hypothetical protein glysoja_004532, partial [Glycine soja]
Swissprottr|Q8LA32|LUL4_ARATH2.00E-06Probable E3 ubiquitin-protein ligase LUL4
trEMBLtr|I1MR22|I1MR22_SOYBN8.00E-26Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G01340.1}
TAIRAT4G222504.00E-25RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005138990493899950-
Transcript Sequence

Network for GWHGAAEX013767

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.5zf-C3HC4_3911369.40E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms12.190
SRR2545915Juvenile tuber17.860
SRP108465SRR5643513five period of Gastrodia elata29.260
SRR5643514five period of Gastrodia elata57.520
SRR5643515five period of Gastrodia elata51.440
SRR5643524five period of Gastrodia elata55.970
SRR5643525five period of Gastrodia elata28.160
SRR5643528five period of Gastrodia elata26.800
SRR5643658five period of Gastrodia elata21.450
SRR5643659five period of Gastrodia elata32.730
SRR5643660five period of Gastrodia elata28.160
SRR5643661five period of Gastrodia elata24.230
SRR5643662five period of Gastrodia elata26.530
SRR5643663five period of Gastrodia elata23.510
SRR5643664five period of Gastrodia elata27.600
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.570
SRR6049655Rhizomagastrodiae_C368-T10_good_114.950
SRR6049656Rhizomagastrodiae_C368-T07_good_115.580
SRR6049657Rhizomagastrodiae_C368-T07_good_112.300
SRR6049658Rhizomagastrodiae_C368-T04_good_114.060
SRR6049659Rhizomagastrodiae_C368-T04_good_114.040
SRR6049660Rhizomagastrodiae_C368-T01_good_115.890
SRR6049661Rhizomagastrodiae_C368-T04_good_113.660
SRR6049662Rhizomagastrodiae_C368-T01_good_119.920
SRR6049663Rhizomagastrodiae_C368-T01_good_120.830
SRR6049664Rhizomagastrodiae_C368-T10_good_116.670
SRR6049665Rhizomagastrodiae_C368-T10_good_116.670
SRP279888GastroGastrodia elata tuber 18.25
JuvenJuvenile tuber37.97
Mother_GastroMother tuber of Gastrodia elata 54.13
Mother_JuvenMother tuber of Juvenile 45.53