Detail information of GWHGAAEX013772/evm.TU.scaffold_53.92
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|256424528|ref|YP_003125181.1| | 3.00E-44 | chitinase [Chitinophaga pinensis DSM 2588] |
| KOG | KOG4742 | 3.00E-117 | Predicted chitinase |
| nr | gi|695058889|ref|XP_009417775.1| | 8.13E-128 | PREDICTED: chitinase 10-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q5NB11|CHI10_ORYSJ | 1.00E-117 | Chitinase 10 (Precursor) |
| trEMBL | tr|M0U0Y4|M0U0Y4_MUSAM | 3.00E-128 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P16770_001} |
| TAIR | AT1G02360 | 3.00E-117 | Chitinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000051 | 4080613 | 4083139 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013772
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00182.18 | Glyco_hydro_19 | 98 | 330 | 1.20E-100 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH19 |
| Carbohydrate-Active enzymes Family | GH19 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006032 | Biological Process | chitin catabolic process |
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0016998 | Biological Process | cell wall macromolecule catabolic process |
| GO:0004568 | Molecular Function | chitinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.360 |
| SRR5643514 | five period of Gastrodia elata | 0.000 | |
| SRR5643515 | five period of Gastrodia elata | 0.660 | |
| SRR5643524 | five period of Gastrodia elata | 0.070 | |
| SRR5643525 | five period of Gastrodia elata | 0.260 | |
| SRR5643528 | five period of Gastrodia elata | 0.090 | |
| SRR5643658 | five period of Gastrodia elata | 0.140 | |
| SRR5643659 | five period of Gastrodia elata | 0.070 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.160 | |
| SRR5643663 | five period of Gastrodia elata | 0.240 | |
| SRR5643664 | five period of Gastrodia elata | 1.840 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.260 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.340 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.370 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.310 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.11 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.04 | |
| Mother_Juven | Mother tuber of Juvenile | 0.04 |