Detail information of GWHGAAEX013775/evm.TU.scaffold_53.96


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|389860732|ref|YP_006362972.1|2.00E-45proteasome subunit alpha [Thermogladius cellulolyticus 1633]
KOGKOG08633.00E-14620S proteasome, regulatory subunit alpha type PSMA1/PRE5
nrgi|743871564|ref|XP_010906336.1|1.54E-161PREDICTED: proteasome subunit alpha type-1-like [Elaeis guineensis]
Swissprottr|P34066|PSA1A_ARATH8.00E-147Proteasome subunit alpha type-1-A
trEMBLtr|M0RJY3|M0RJY3_MUSAM5.00E-160Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}
TAIRAT5G427903.00E-146proteasome alpha subunit F1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005141924174213153-
Transcript Sequence

Network for GWHGAAEX013775

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10584.8Proteasome_A_N6284.00E-13
PF00227.25Proteasome292143.80E-55
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02725PSMA1 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0051603Biological Processproteolysis involved in cellular protein catabolic process
GO:0004298Molecular Functionthreonine-type endopeptidase activity
GO:0004175Molecular Functionendopeptidase activity
GO:0019773Cellular Componentproteasome core complex, alpha-subunit complex
GO:0005839Cellular Componentproteasome core complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms121.560
SRR2545915Juvenile tuber120.010
SRP108465SRR5643513five period of Gastrodia elata152.310
SRR5643514five period of Gastrodia elata174.800
SRR5643515five period of Gastrodia elata155.730
SRR5643524five period of Gastrodia elata165.880
SRR5643525five period of Gastrodia elata163.310
SRR5643528five period of Gastrodia elata185.120
SRR5643658five period of Gastrodia elata175.550
SRR5643659five period of Gastrodia elata131.420
SRR5643660five period of Gastrodia elata138.180
SRR5643661five period of Gastrodia elata134.050
SRR5643662five period of Gastrodia elata146.000
SRR5643663five period of Gastrodia elata137.280
SRR5643664five period of Gastrodia elata150.020
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1141.510
SRR6049655Rhizomagastrodiae_C368-T10_good_1181.450
SRR6049656Rhizomagastrodiae_C368-T07_good_1179.150
SRR6049657Rhizomagastrodiae_C368-T07_good_1133.690
SRR6049658Rhizomagastrodiae_C368-T04_good_1129.190
SRR6049659Rhizomagastrodiae_C368-T04_good_1130.060
SRR6049660Rhizomagastrodiae_C368-T01_good_1138.510
SRR6049661Rhizomagastrodiae_C368-T04_good_1150.240
SRR6049662Rhizomagastrodiae_C368-T01_good_1230.560
SRR6049663Rhizomagastrodiae_C368-T01_good_1179.880
SRR6049664Rhizomagastrodiae_C368-T10_good_1226.230
SRR6049665Rhizomagastrodiae_C368-T10_good_1226.230
SRP279888GastroGastrodia elata tuber 127.37
JuvenJuvenile tuber122.79
Mother_GastroMother tuber of Gastrodia elata 123.25
Mother_JuvenMother tuber of Juvenile 104.10