Detail information of GWHGAAEX013776/evm.TU.scaffold_53.97


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|193215979|ref|YP_001997178.1|3.00E-102ornithine carbamoyltransferase [Chloroherpeton thalassium ATCC 35110]
KOGKOG15045.00E-180Ornithine carbamoyltransferase OTC/ARG3
nrgi|695032690|ref|XP_009403901.1|0PREDICTED: ornithine carbamoyltransferase, chloroplastic [Musa acuminata subsp. malaccensis]
Swissprottr|Q43814|OTC_PEA0Ornithine carbamoyltransferase, chloroplastic (Precursor)
trEMBLtr|M0T5E9|M0T5E9_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P09000_001}
TAIRAT1G753305.00E-180ornithine carbamoyltransferase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005142796244310964-
Transcript Sequence

Network for GWHGAAEX013776

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02729.20OTCace_N812221.50E-44
PF00185.23OTCace2283794.70E-52
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00611OTC, argF, argI Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Biosynthesis of amino acidsmap01230
Arginine biosynthesismap00220

Gene Ontology

GO term OntologyName
GO:0006591Biological Processornithine metabolic process
GO:0006520Biological Processcellular amino acid metabolic process
GO:0016743Molecular Functioncarboxyl- or carbamoyltransferase activity
GO:0016597Molecular Functionamino acid binding
GO:0004585Molecular Functionornithine carbamoyltransferase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms4.220
SRR2545915Juvenile tuber9.390
SRP108465SRR5643513five period of Gastrodia elata16.590
SRR5643514five period of Gastrodia elata17.500
SRR5643515five period of Gastrodia elata13.990
SRR5643524five period of Gastrodia elata15.690
SRR5643525five period of Gastrodia elata4.010
SRR5643528five period of Gastrodia elata3.290
SRR5643658five period of Gastrodia elata3.410
SRR5643659five period of Gastrodia elata17.180
SRR5643660five period of Gastrodia elata15.780
SRR5643661five period of Gastrodia elata20.150
SRR5643662five period of Gastrodia elata13.950
SRR5643663five period of Gastrodia elata16.720
SRR5643664five period of Gastrodia elata13.750
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.240
SRR6049655Rhizomagastrodiae_C368-T10_good_113.640
SRR6049656Rhizomagastrodiae_C368-T07_good_116.130
SRR6049657Rhizomagastrodiae_C368-T07_good_112.040
SRR6049658Rhizomagastrodiae_C368-T04_good_19.440
SRR6049659Rhizomagastrodiae_C368-T04_good_16.600
SRR6049660Rhizomagastrodiae_C368-T01_good_112.560
SRR6049661Rhizomagastrodiae_C368-T04_good_114.110
SRR6049662Rhizomagastrodiae_C368-T01_good_125.630
SRR6049663Rhizomagastrodiae_C368-T01_good_113.500
SRR6049664Rhizomagastrodiae_C368-T10_good_120.770
SRR6049665Rhizomagastrodiae_C368-T10_good_120.770
SRP279888GastroGastrodia elata tuber 9.17
JuvenJuvenile tuber12.43
Mother_GastroMother tuber of Gastrodia elata 2.64
Mother_JuvenMother tuber of Juvenile 6.95