Gene detail

Detail information of GWHGAAEX013782/evm.TU.scaffold_53.104

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2280	Vacuolar assembly/sorting protein VPS16
nr	gi\|743756818\|ref\|XP_010918871.1\|	PREDICTED: protein VACUOLELESS1 [Elaeis guineensis]
Swissprot	tr\|Q93VQ0\|VCL1_ARATH	Protein VACUOLELESS1
trEMBL	tr\|E0CU27\|E0CU27_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22093.3}
TAIR	AT2G38020	vacuoleless1 (VCL1)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000051	4761338	4849771	+

Transcript Sequence
>GWHTAAEX013782 CCGATTTCTTTGCCATTTCTTGCTGACCCCGCTCGCCTCCTCTCCTGAACGCTAATTCTTTCAAGGACGCCCTTTACCGGTCTCCAAATTTTCTCTTCCATTTTCTATCTCCGATGGTGATCTAGGGCCACTTGGCTTTGGTGCTCGAAGCTTTAATGGCGGCTGTCTCCGTCGCAGCCGAATGGCAACTCCTTTACAACCGCTACTATCGCAAGCCGGAAATCTATTCGATGCAGTGGGGACGAATGGATCTCACACGCAATCGCGTAGCCTGCGCTCCTTTTGGAGGTCCCATTGCCGTCATCCGGGACGATTCCAAGATTGTTCAGCTTTTTGAGGAATCCGCCCGTCGAAAGCTACACATATTTAATTCCGCTGGGGTCCTCCTTGCCTCAACGGTTTGGGATCGTTCTGGTGGTCGACTTGTTGGCATGGCCTGGACCGATGACCATGTCCTTGTCTGCGTCGTCCAAGATGGCACTGTGTATCGTTACGATGTTCACGCAGAACCCTTTGGCTCCCAATTCTCTATGGGAAGGGACTGCTTTGAACAAAACGTAGTTGAGTGTATTTTCTGGGGAAATGGCATGATTTGTCTCACTGAGGGCTACCAGATCTTCTGTGTCTCTAATTTCAAGAACCCTCAGCCTTGCAAGCTTTCTGACCCTGCTCTGGAGGATTACCCTCTCTGTGTTGCAGTGATTGAGCCACAGTACACAATGCATGGGAATGTTGAGGTGCTTCTTGGAGTTGGGGATCATGTACTTTTTGTTGAGGAGGATAGCGTTCAGCAGCTTGGAGTTGGGGTTGGTCCGCTCCAGAAAATGGCGGTATCTCCTAATGGCAAGTACCTTGCAGCTTTTACACATGAAGGGAGACTACTTGTTCTGCCCACTGATTTTTCAAACATCATATCTGGGTTTTCTTGTGAGTCAACGTTACCTCCAGAGCAGATAGCTTGGTGTGGCATGGATAGTGTGCTGCTCTATTGGAAAGATGTGCTTTTAATGGTGGGCCCTACTGGTGATCCGGTGCATTATTTGTATGATGAACCGATAATACTCATTCCTGAGTGTGATGGTGTGCGAATCCTTTCCAATTCAAATATGGAATTCCTTCAAAGGGTGCCTGATTCGTCAGTGTCTATCTTTCAAATTGGAAGCACAAGTCCAGCAGCATTATTATATGATGCTTTGGAGCACTTTGACAAGCACAGTGCTAAGGCTGATGAAAATTTGCGGATGATCCGTTCATCGTTACCTGAAGCAGTTGAGGCTTGTATTGATGCTGCGGGACATGAGTTTGATGTTTCTCGGCAATGTACATTACTAAGAGCTGCTAGTTATGGCCGTGCATTTTGCAGCCAATTTCCCTGTGACCGCTTTCAAGATATGTGCAAAAGTCTTCGTGTTCTGAATGCTGTTCGGAACCATGACATTGGCATTCCATTAAGCATTCAACAATATAAGTTACTTACAGCACCAGTTCTGATTGGGCGTTTGATTAATGCCCACCATCACCTTCTTGCTCTGAGGATATCTGAGTATCTTAATTTGAATTCAGAAGTGGTTATAATACACTGGACTTGCACCAAGATATCAGCATCTGCATCCGTTGATGACCTTGTTCTTCTGGAAGTCTTACTGGATAAGGCAAAGTTGTGCGAAGGTATCTCTTATGCCGCAATTGCAGCTCATGCAGATAACTGTGGGAGGCGGAAGTTAGCCGCCATGCTTGTTGTTCATGAACGCCAGTCTTCAAAACAGGTTCCTTTGTTACTGAGCATTGGGGAAGAGGATACTGCTCTGGTAAAATCTACTGAAAGTGGTGATACTGATCTTGTATATCTCGTTCTCTTCCATGTCTGGCAGAAGAAGCCACCTTTAGATTTTTTTGGGACAATTAATGCAAGACCATTGGCTCGAGATCTGTTCATCACATATGCAAGGTTTTTTAAACATGAATTTCTCAAGGATTTTTTCTTATCTACAGGCCAGCTTCAAGACGTTGCGTTTCTCTTGTTGAAAGAATCATGGAACTTTGAAAGAAACCCTATGGCAAGCAAAGGATCTCCCCTACATGGTCCTCGAATTAGACTGATTGAGCAAGCACAGAAGCTTTTTTCTGAGACCAAAGAACATCACTTTGAATCAAAAGCTGCTGAAGAGCATGCCAGATTACTGAGGTTGCAACATGAACTTGAAGTCTCTACAAAGCAGGCTATATTTGTTGGCTCAAGCATCAGCGATACAATTCGTACATGCATTGTGCTGGGAAACCATAGGGCTGCTATGAGAGTTAGAACAGAATTCAAGGTTTCTGAAAAGAGGTGGTACTGGCTCAAATCCTTTGCACTGGCCACAGTAAGGGACTGGGATTCTCTTGAAAAATTTTCTAAAGAGAAGAGACCACCAGCTGGATACAAGCCGTTTGTTGAAGTATGTATCGATGCTGATGAAAAATCAGAGGCTTTAAAATATATACCTAAACTTACTGATCCACGAGAAAAATCAGAGGCCTTTGCACGGGTTGGTATGGCTAAGGAAGCCGCAGATGCTGCTTCTCAGGCAAAGGATAGCGAACTTTTTAGCCGTTTGAAACTAACGTTAGCTCAAAATGCTGCTGCGGCATCGATTTTGGAAGGCTGGAGAGAACGGTTATCCTTCCAAGGAGCCTACTGAGGCTTTTCATGACGGCCTCAGCCTCCCATTACTTCTGACCTTGACCTCTTACTTAGGCCAGAAGATCCTACTTCACCTTTGTAGATCAGTCTTGGAGACTGTATAACATAGGCTTTAAAGCGTTTTTCTAACGGAGTTCAACAATTTTCTTGTGGGTTGTGTAAGATTTTACAGCATTTCAACTGCTAAGTGGAGCTTACGAGGAAGTGGTGAGTTTGGCTTCTCTATAAATAACGGTGTCGTGAAGGAGTGAGTGTTCTTTGTGTTGAATTGCCTAAAAAGACTCTTCAAAGAGTAAAAATGTATAATTAGAAAATTATATCAACTTTTTGTTGTGCATAATTAGAAAAACAATTTGGGATGCTTTGATTATAATATATGAAGATGCTATGGTACCCATAAATTCCTTTTTAATGCTCGCCCGCGAA

Network for GWHGAAEX013782

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04841.12	Vps16_N	8	410	1.00E-88
PF04840.11	Vps16_C	506	817	2.00E-67

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20180	VPS16	Autophagy - yeast	map04138

Gene Ontology

GO term	Ontology	Name
GO:0007033	Biological Process	vacuole organization
GO:0006886	Biological Process	intracellular protein transport
GO:0005515	Molecular Function	protein binding
GO:0005737	Cellular Component	cytoplasm

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.780
SRP064423	SRR2545915	Juvenile tuber	44.160
SRP108465	SRR5643513	five period of Gastrodia elata	17.150
	SRR5643514	five period of Gastrodia elata	14.210
	SRR5643515	five period of Gastrodia elata	13.820
	SRR5643524	five period of Gastrodia elata	13.440
	SRR5643525	five period of Gastrodia elata	12.170
	SRR5643528	five period of Gastrodia elata	10.560
	SRR5643658	five period of Gastrodia elata	13.410
	SRR5643659	five period of Gastrodia elata	15.370
	SRR5643660	five period of Gastrodia elata	18.060
	SRR5643661	five period of Gastrodia elata	14.500
	SRR5643662	five period of Gastrodia elata	15.390
	SRR5643663	five period of Gastrodia elata	13.290
	SRR5643664	five period of Gastrodia elata	16.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	27.880
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	22.520
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	23.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	33.510
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	36.530
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.860
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	31.370
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	34.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.040
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	25.090
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.980
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.980
SRP279888	Gastro	Gastrodia elata tuber	19.98
	Juven	Juvenile tuber	23.31
	Mother_Gastro	Mother tuber of Gastrodia elata	21.06
	Mother_Juven	Mother tuber of Juvenile	22.91