Detail information of GWHGAAEX013783/evm.TU.scaffold_53.105


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|455737802|ref|YP_007504068.1|1.00E-32Isopentenyl-diphosphate delta-isomerase [Morganella morganii subsp. morganii KT]
KOGKOG01424.00E-138Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase
nrgi|672930575|gb|AIK21782.1|6.28E-143isopentenyl diphosphate isomerase 2 [Panax notoginseng]
Swissprottr|O48964|IDI1_CAMAC4.00E-143Isopentenyl-diphosphate Delta-isomerase I
trEMBLtr|A0A076VAK4|A0A076VAK4_9APIA2.00E-143Isopentenyl diphosphate isomerase 2 {ECO:0000313|EMBL:AIK21782.1}
TAIRAT5G164404.00E-138isopentenyl diphosphate isomerase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005148719574900348+
Transcript Sequence

Network for GWHGAAEX013783

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00293.27NUDIX1252731.00E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01823idi, IDI Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName
GO:0008299Biological Processisoprenoid biosynthetic process
GO:0004452Molecular Functionisopentenyl-diphosphate delta-isomerase activity
GO:0016787Molecular Functionhydrolase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.930
SRR2545915Juvenile tuber19.180
SRP108465SRR5643513five period of Gastrodia elata14.870
SRR5643514five period of Gastrodia elata18.730
SRR5643515five period of Gastrodia elata17.500
SRR5643524five period of Gastrodia elata23.990
SRR5643525five period of Gastrodia elata32.690
SRR5643528five period of Gastrodia elata37.670
SRR5643658five period of Gastrodia elata36.470
SRR5643659five period of Gastrodia elata25.260
SRR5643660five period of Gastrodia elata28.500
SRR5643661five period of Gastrodia elata27.410
SRR5643662five period of Gastrodia elata24.370
SRR5643663five period of Gastrodia elata24.430
SRR5643664five period of Gastrodia elata22.230
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.210
SRR6049655Rhizomagastrodiae_C368-T10_good_113.490
SRR6049656Rhizomagastrodiae_C368-T07_good_117.180
SRR6049657Rhizomagastrodiae_C368-T07_good_114.180
SRR6049658Rhizomagastrodiae_C368-T04_good_111.350
SRR6049659Rhizomagastrodiae_C368-T04_good_110.910
SRR6049660Rhizomagastrodiae_C368-T01_good_116.020
SRR6049661Rhizomagastrodiae_C368-T04_good_114.310
SRR6049662Rhizomagastrodiae_C368-T01_good_115.060
SRR6049663Rhizomagastrodiae_C368-T01_good_110.730
SRR6049664Rhizomagastrodiae_C368-T10_good_116.540
SRR6049665Rhizomagastrodiae_C368-T10_good_116.540
SRP279888GastroGastrodia elata tuber 38.71
JuvenJuvenile tuber30.27
Mother_GastroMother tuber of Gastrodia elata 9.51
Mother_JuvenMother tuber of Juvenile 13.41