Detail information of GWHGAAEX013790/evm.TU.scaffold_53.116
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1414 | 1.00E-34 | Transcriptional activator FOSB/c-Fos and related bZIP transcription factors |
| nr | gi|743798443|ref|XP_010925239.1| | 8.64E-37 | PREDICTED: transcription factor HY5-like [Elaeis guineensis] |
| Swissprot | tr|O24646|HY5_ARATH | 4.00E-35 | Transcription factor HY5 |
| trEMBL | tr|M0SW35|M0SW35_MUSAM | 1.00E-36 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P06060_001} |
| TAIR | AT5G11260 | 1.00E-34 | Basic-leucine zipper (bZIP) transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000051 | 5616376 | 5629303 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013790
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00170.20 | bZIP_1 | 39 | 100 | 9.50E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bZIP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K16241 | HY5 | Circadian rhythm - plant | map04712 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.320 |
| SRR2545915 | Juvenile tuber | 0.180 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.490 |
| SRR5643514 | five period of Gastrodia elata | 15.210 | |
| SRR5643515 | five period of Gastrodia elata | 18.900 | |
| SRR5643524 | five period of Gastrodia elata | 7.190 | |
| SRR5643525 | five period of Gastrodia elata | 37.500 | |
| SRR5643528 | five period of Gastrodia elata | 16.800 | |
| SRR5643658 | five period of Gastrodia elata | 14.190 | |
| SRR5643659 | five period of Gastrodia elata | 12.220 | |
| SRR5643660 | five period of Gastrodia elata | 11.680 | |
| SRR5643661 | five period of Gastrodia elata | 16.680 | |
| SRR5643662 | five period of Gastrodia elata | 12.630 | |
| SRR5643663 | five period of Gastrodia elata | 21.630 | |
| SRR5643664 | five period of Gastrodia elata | 12.930 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.230 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.600 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.810 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.590 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.590 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.07 |
| Juven | Juvenile tuber | 15.96 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.14 | |
| Mother_Juven | Mother tuber of Juvenile | 4.01 |