Detail information of GWHGAAEX013796/evm.TU.scaffold_54.6


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|427722688|ref|YP_007069965.1|3.00E-43small GTP-binding protein [Leptolyngbya sp. PCC 7376]
KOGKOG06197.00E-95FOG: Leucine rich repeat
nrgi|297610977|ref|NP_001065462.2|4.43E-123Os10g0572300 [Oryza sativa Japonica Group]
Swissprottr|Q8S7M7|PIRL5_ORYSJ4.00E-124Plant intracellular Ras-group-related LRR protein 5
trEMBLtr|A2ZAG4|A2ZAG4_ORYSI3.00E-122Uncharacterized protein {ECO:0000313|EMBL:EAY79598.1}
TAIRAT2G174407.00E-95plant intracellular ras group-related LRR 5

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000059216280224570-
Transcript Sequence

Network for GWHGAAEX013796

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13855.5LRR_8851272.50E-08
PF13855.5LRR_81632194.30E-07
PF13855.5LRR_82312907.20E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms28.040
SRR2545915Juvenile tuber50.700
SRP108465SRR5643513five period of Gastrodia elata17.210
SRR5643514five period of Gastrodia elata20.190
SRR5643515five period of Gastrodia elata21.860
SRR5643524five period of Gastrodia elata17.610
SRR5643525five period of Gastrodia elata19.700
SRR5643528five period of Gastrodia elata16.790
SRR5643658five period of Gastrodia elata22.640
SRR5643659five period of Gastrodia elata12.370
SRR5643660five period of Gastrodia elata15.610
SRR5643661five period of Gastrodia elata10.570
SRR5643662five period of Gastrodia elata10.330
SRR5643663five period of Gastrodia elata12.520
SRR5643664five period of Gastrodia elata8.950
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_127.340
SRR6049655Rhizomagastrodiae_C368-T10_good_120.820
SRR6049656Rhizomagastrodiae_C368-T07_good_123.510
SRR6049657Rhizomagastrodiae_C368-T07_good_146.940
SRR6049658Rhizomagastrodiae_C368-T04_good_130.050
SRR6049659Rhizomagastrodiae_C368-T04_good_145.720
SRR6049660Rhizomagastrodiae_C368-T01_good_119.920
SRR6049661Rhizomagastrodiae_C368-T04_good_138.970
SRR6049662Rhizomagastrodiae_C368-T01_good_18.000
SRR6049663Rhizomagastrodiae_C368-T01_good_113.190
SRR6049664Rhizomagastrodiae_C368-T10_good_18.700
SRR6049665Rhizomagastrodiae_C368-T10_good_18.700
SRP279888GastroGastrodia elata tuber 42.36
JuvenJuvenile tuber16.46
Mother_GastroMother tuber of Gastrodia elata 47.28
Mother_JuvenMother tuber of Juvenile 32.17