Gene detail

Detail information of GWHGAAEX013797/CADD01096.1.gene

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|188578838\|ref\|YP_001915767.1\|	1.00E-06	integrase core domain-containing protein [Xanthomonas oryzae pv. oryzae PXO99A]
KOG	KOG0017	7.00E-85	FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
nr	gi\|672180014\|ref\|XP_008810186.1\|	6.31E-140	PREDICTED: uncharacterized protein LOC103721669 [Phoenix dactylifera]
Swissprot	tr\|P10978\|POLX_TOBAC	8.00E-76	Endonuclease
trEMBL	tr\|I1J3P8\|I1J3P8_BRADI	3.00E-145	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI5G27155.1}
TAIR	AT3G29775	7.00E-85	transposable element gene

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	220445	224563	-

Transcript Sequence
>GWHTAAEX013797 TTCTCAGATCATATTTTCGATGGCAAGCAAGCGGAGTTGAAGGCAGGATTTCTGAGAAAATCGTGGGCATCTCTTCGGATTGAGAGATAAGCAGAGCGATTTTTCTTTTTCGCTCTCCCATACATATTTATAGTAGTTCTATTCAATTGTTTCGTTTTCCAAATCTTCAATTTTCATTGTTTAGAGCAGCATCGTCTCCCTTATTCACTCATGTCTGTCTGTTTTAAATTTTGATGTGCCTTGCGCTAATCTTGGAACAAATTTGTCGGAAAATCTGCCGAAATTTTGTCTTCAAGATCATTGAATTTGTTAGACTGTAGAATTTCTTTTTTAGTTGGAAGTGAACTTTATTAAAATAAATAAATGTATATAATAAATCAAGATAATTTAATATTTAGATAAGTGTTATATTTTTATTTTTAATTAGATGTGAGTGAAGAGATGTGTTTTTTGAGATGTGTCTTTTATTATGGATGTGTCTTTTCATTGACACAGCTTAGACTATTATATTTACTAATGTATTTGTTAAATTAGATGAGCAAAAATAAAATATTATTCCAATATATTAAATTCTATCTTCTTTCTTTTATTTGAAGACTGTGAATTATTCAAGTGCTCTTTCTTTACATGGTATCAGAAATTGGTTGATAATTCGTCTTGCAATTATTCCGATTTCTCAACAATGGAAGGCAGTGATAGTTTTCATAGTTTGGGATTTGATATGCTCACACATACAAATTTTAAGAAATGAAAGTCATGCTTAGAGAGTTATTTGTTGGGAGAAGATTTGTGGGAAGTTGTTGGTAGAGATGCACAGGAAGCGGTATCATCGACTGGAACAAATGACCGGAAAGTCAAGGCATGGAAGAAAATAAATGCGAAAGCAGAGTTCACTCTAAAAAGGATTATCCCACCGGACTTATTCGATCACATTATAGGGTGCAATTCGGCGTCAGAAATTTGGGTATCTCTTGATGGTTTGTTCAACAAGAAAAATGTGGCAAGGCTTCAATTTCTTGATAACGAGTTGGCGAAAGCAAATCATGGAGAGCTTTCTATTTCTGCATTCTTCCTAAAGTTGAAAAATCTATGTGCAGAGATTATCGCATTGGATCCGAAAGAGCCAATTTCTGAGGCAAAGATGAAGAGGCATATTATCAGAGGATTACGGAAGGAGTATCTATCATATGTCACAGCAATGCAAGGATGGGCTACTAAACCATCTCTTCTGATGGAATTGGAGAACCTCTTGGTATCTCAGGAAAGTTTGGCTAGGCAGATAGCAGGAGTGTCCATCTCCGGTGAAGGCGGTGACGTTCTATACACCGGAAAAAAGAAATACTGGGATAAGAAAAAGAAGAATGATAGTGAAGATTTTCCTGCCTCATCTAAGGAGGGCGGTGCTCATTCTCTCATAGGAATGATGAAGGAAAGAAAGTTGTCAGATGCTTTAGATGTAATAAGGTTGGACATTACAAACGTGATTGTAGGGTCAACCTCACATCAGGTCATACAGCAGAGAAGGAAGAAGGTATAAAGGAGGACGAAGGTTGGGGGAGATGTTTCCTTGTCGAAAATGTCTCTACTGTGGAAGCCTTAGCCTTTGTGAACTTTTAAGATGATTGGATCATTGATTCTAGATGTGGACAATATCTTATCGGTGATGGGTCCAAGTTCTCATCTCTGTGAAAGTATGAAGGAAATGATGCAATTGTGACAGCGGATAACACAGTCCATGCGGTGGAGCAGGAAAGGATTGTGACAGTGGGTAGTGATCAAAGTGCACTCACGTTAAAGAGTGTGTATCACGTGTCGTGCATGAAGAAGAATCTCTTTTTAGTAACAAATGTGGTTGATGCAGGGTACCATGTGCTTTTTGGGCCGACAGAGGTAAGGTTCCTACGAAACTTAAATTTGGTAAAAGCAGTGGTGACTCACATTGGAAGACGAGTTCGTGATTTGTTTGTTCTTTCCGCAACATCATACGTGGACAAGATGAAGAGCAACGATAGTGCTGTAATTTGGCACAAAAGGTTGGAGCACGTCGACATGGAAAAGTTGAGAGTGATGGTGGCAAAGAGTCTTGTTAGAGACTTACCTAGCTTATCTTCTTTCGGTGACGGGCATGTATGTGAAGGATGTCAATTTGGAAAGGCTCATCGTCTTCTATTTGACATGTCTCTCTCGAGGAGCAAGAGACTGCTAGAATGCATCCATAGCGATGTGATGGGGCCAACAGCTACCTCATCTTATTCAGGAAACAGATATATGCTGTTGTTTGTGGATGATTTCTCACGCTACACGTGGGTGTATCTCTTAAAAGAGAAATCAGAAGTGTTTGGCAAGTTCTTGGAATTCAAAGAGAGGGTGGAAGGTGTGCTTTGACAAAAGATCAATAAGCTCAGAACGGATAATGGTGGAGAGTTTACATCTGCCGAGTTCCTTTCTTTCTGCCGCAAGCATGGAATTAAAAGGGAGTTATCTTGTGCTTACACGCCGCAGCAAAATGGGGTGGTCGAAAGGAAGATTCGACATATTACTGAGACTTGTAGGTGTTGGTTGCATGCTAAAGGAATTCCCAAAGCCTTATGGGCAGAGGGAATGGTTTGTGCGGCATATGTGATAAACCGATTGCCATTAAGCCCGAACAATCAAAAGTCGCCGTATGAACTTATATTTGGAGAAGTGCCGAGTTTGAAGCATATGCGAGTGTTTGGAGCAACTTGTTATGTTCATGTTTCAGATATACTAAGAACAAAACTTGAAGCCAAAGCCATAAAGTGTTTTTTTATTGTCTACGATGAACAAAAGAAGGGCTGGAAATGTATGGACCCCAGACTCGAAGGTTCATTGTCTCTCGTGACGTGGTGTTCGACGAATTGACGTCATATGATGGAGGGTCTAACATCATGTTGGAAGAGAACAAAGGAGTAGCAAGTCTTGAAGAAGAAACTGAAGAAGAATAAGTTGAGTTACCAGTGTCTCCAGGAGCCCCATACTCTTCAAATTCGATGTAAATGGAGATGGAGTCAAGAAGAAGGGGGAGTAATGCTTCAAGTCATAGTGATGGGGGAGCAAGTGCAGAGACATGAGGTGGAGAGTAGTTCTACTCTTAGAAGATCAAACCGAATGATTATGCCACCTGCCCGCTATAGAGAAGGAAATTTAGTAATAATGAGTTCATGTTACTTTGCCGGCCCACTTGATGAGCGGGAGCCGTCGTGCTATGATGAAGCTAAAAGCGTAAAACAATGGGTAGAAGCCGTGGAAGAGGAGATTAATGCCCTCAAGAAAAATGAAACATGGGATCTTATGCCCAAGGTTGATAGCGTTACTCCGGTTACTTGCAAATGGGTTTATAAAGTGAAGAAAAAATCGGACCGCAGTGTCGAGCGCTTCAAATCTAGGCTTGTCACTTGAGGGTTCTCACAAAAGTATGAAAAGGGCTAGAAGAGACGTTTAGTCCGGTTGCGAAGATGACATTGGTACGTGTTGTGATTGCATTGGCAGCATGCAAAAATTGGAAATTGTGGCAGTTGGATGTCAAGAATGCATTTCTTTATGGGGATATTGATAAAGATATCTTCATAGTGCAGCCACAATGATACGTATCCAAAGAGCATCTGAATTATGTATGTAAGTTGAAAAAAGCACTATATAGTTTAAAACAAGCACCACGGGCATGGTATGAAAAAATAGCAGAGTACTTGCAATTCTGTGAATATTTCTCTTCAGATTCTGACTCAAGTATGTTTGTGAAGAAGCATGGCAACGTACATGTTCTTGTGTATTTGTACGTTGATGATATGATTGTGACAGGAAATGACGATGGTGAGGTAACAATGCTTAGAGAGGAGTTATCAATCCTGTTCGAAATAAAAAACTTAGGTGAACTTTACCATTTCCTTGGCTTGGAAGTTCAAAAGGTGAAGAAGGGACTAATTATATGTCAGACTGGATATACTAGCAAGATCGTTGAACGATTTAGCATAAAAGAAGGCAAGTCATGTTCCACCCCCTTGGAAACGAACATGAAATTAATCCATAAAGAAGGTAGGATTTTAGTGGATCCTAAGCCATTTCGTGCACTAGTGGGGAGTTTTATTTATTTAACGATCA

Network for GWHGAAEX013797

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00098.22	zf-CCHC	450	465	0.00013
PF13976.5	gag_pre-integrs	633	685	7.90E-10
PF00665.25	rve	701	813	4.30E-20

Protein Sequence

>GWHPAAEX013797
FSDHIFDGKQAELKAGFLRKSWASLRIERAERFFFFALPYIFIVVLFNCFVFQIFNFHCLEQHRLPYSLMSVCFKFCALRSWNKFVGKSAEILSSRSLNLLDCRISFLVGSELYNKMYIINQDNLIFRVLYFYFLDVSEEMCFLRCVFYYGCVFSLTQLRLLYLLMYLLNMSKNKILFQYIKFYLLSFIRLIIQVLFLYMVSEIGFVLQLFRFLNNGRQFSFGIYAHTYKFEMKVMLRELFVGRRFVGSCWRCTGSGIIDWNKPESQGMEENKCESRVHSKKDYPTGLIRSHYRVQFGVRNLGISWFVQQEKCGKASISRVGESKSWRAFYFCILPKVEKSMCRDYRIGSERANFGKDEEAYYQRITEGVSIICHSNARMGYTISSDGIGEPLGISGKFGADSRSVHLRRRRSIHRKKEILGEKEERFSCLIGGRCSFSHRNDEGKKVVRCFRCNKVGHYKRDCRVNLTSGHTAEKEEGIKEDEGWGRCFLVENVSTVEALAFVNFDDWIIDSRCGQYLIGDGSKFSSLKYEGNDAIVTADNTVHAVEQERIVTVGSDQSALTLKSVYHVSCMKKNLFLVTNVVDAGYHVLFGPTEVRFLRNLNLVKAVVTHIGRRVRDLFVLSATSYVDKMKSNDSAVIWHKRLEHVDMEKLRVMVAKSLVRDLPSLSSFGDGHVCEGCQFGKAHRLLFDMSLSRSKRLLECIHSDVMGPTATSSYSGNRYMLLFVDDFSRYTWVYLLKEKSEVFGKFLEFKERVEGVLQKINKLRTDNGGEFTSAEFLSFCRKHGIKRELSCAYTPQQNGVVERKIRHITETCRCWLHAKGIPKALWAEGMVCAAYVINRLPLSPNNQKSPYELIFGEVPSLKHMRVFGATCYVHVSDILRTKLEAKAIKCFFIVYDEQKKGWKCMDPRLEGSLSLVTWCSTNRHMMEGLTSCWKRTKEQVLKKKLKKNKLSYQCLQEPHTLQIRCKWRWSQEEGGVMLQVIVMGEQVQRHEVESSSTLRRSNRMIMPPARYREGNLVIMSSCYFAGPLDEREPSCYDEAKSVKQWVEAVEEEINALKKNETWDLMPKVDSVTPVTCKWVYKVKKKSDRSVERFKSRLVTGFSQKYEKGKRRLVRLRRHWYVLLHWQHAKIGNCGSWMSRMHFFMGILIKISSCSHNDTYPKSIIMYVSKKHYIVNKHHGHGMKKQSTCNSVNISLQILTQVCLRSMATYMFLCICTLMILQEMTMVRQCLERSYQSCSKKTVNFTISLAWKFKRRRDLYVRLDILARSLNDLAKKASHVPPPWKRTNSIKKVGFWILSHFVHWGVLFIRS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0015074	Biological Process	DNA integration
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.470
SRP064423	SRR2545915	Juvenile tuber	19.880
SRP108465	SRR5643513	five period of Gastrodia elata	15.180
	SRR5643514	five period of Gastrodia elata	20.870
	SRR5643515	five period of Gastrodia elata	25.370
	SRR5643524	five period of Gastrodia elata	18.670
	SRR5643525	five period of Gastrodia elata	20.270
	SRR5643528	five period of Gastrodia elata	10.900
	SRR5643658	five period of Gastrodia elata	14.410
	SRR5643659	five period of Gastrodia elata	11.040
	SRR5643660	five period of Gastrodia elata	18.030
	SRR5643661	five period of Gastrodia elata	9.730
	SRR5643662	five period of Gastrodia elata	8.730
	SRR5643663	five period of Gastrodia elata	12.150
	SRR5643664	five period of Gastrodia elata	9.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.850
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.890
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	23.060
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.350
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.840
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.460
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.040
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.750
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.660
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.890
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.890
SRP279888	Gastro	Gastrodia elata tuber	18.28
	Juven	Juvenile tuber	18.82
	Mother_Gastro	Mother tuber of Gastrodia elata	24.06
	Mother_Juven	Mother tuber of Juvenile	38.39