Gene detail

Detail information of GWHGAAEX013804/evm.TU.scaffold_54.10

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|14521033\|ref\|NP_126508.1\|	1.00E-36	gtp1/obg family GTP-binding protein [Pyrococcus abyssi GE5]
KOG	KOG1490	9.00E-175	GTP-binding protein CRFG/NOG1 (ODN superfamily)
nr	gi\|743832087\|ref\|XP_010934882.1\|	0	PREDICTED: nucleolar GTP-binding protein 1 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9C6I8\|NOG1_ARATH	4.00E-30	Nucleolar GTP-binding protein 1
trEMBL	tr\|A0A061EC86\|A0A061EC86_THECC	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1 {ECO:0000313\|EMBL:EOY02223.1}
TAIR	AT1G80770	9.00E-175	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	397766	464936	-

Transcript Sequence
>GWHTAAEX013804 TTTAGAGAAATGAAAGAAATCGTCGCCTTTGAGTTTTCTCTATTCTCCTCTCAGATTTTTCATTGTTCTCACACTTGGGTTTTAAGCTACTTAGCCACCACAAAGCTTTCTCATAGAAAAATAACACATACTAACCCAACAAAACACTTTAAGCATATATATGAGATACTAAACAAGCTATAAAGTGTCATAAATAGCTCACGGGACATGTCACAAATAAGTGGATTCGCCGCCCTTGGACACGCTTGCCTTAATGTCTGCACGGTACTGTCGGGCACCCAGTAGCATGTTCTGGCGCTTGCCTCACTGTCTGTATGGCCTTGCCGGGCGCCCATGAGTGTGTATGGGCGCTTACCTTACTGTCGACTTCTGCTTTTGGGAGCCCAGGTGAGTGCCTTGGCGCATGGATTGCTGTTGACTCATGCCGTTTAGCGCTCAGAGGCGCATCTGGGCACCAATATTTGTTAGTTGCTGCTCGGCGCCCATTAGCCACACAGCTTTCGGCATGTAGCTGTGTTGGGCGCCTGTATTCTATTGGTTGATGTAGTATTGCCCAGGAAACCATCGGGGCTCCAATTAATTTCCACACCATAACACTCACGCCCACTCAAAGAGATAATAAAACCATATCCATTCTCCAATCGTTACACCTCCTTAAAATGCTTTGAACACTCCAAAATCACTCACTTATCCGCTCACGTAAAGGGTTGCAAGGTTAGGGCTACGATCGCCGGCAGTGGGCCATTCGCTGTTCGTAACTTCACCGGTTGGCTGATCATTGCTATCTGCTTTCTTTTCGACGATATATTATACTCAGTTTGCTTGTGTTTTTGCTGGAATTGGATAATTTGTAGTTTTTTTGGTACAAGCGATATGATAAGTGGCAGAACCTTAGCCCTCATCCAACAGTGGTGGGTTCCATCTTCTTGCAAGCACTTTCTTCATCTGCTTGTCGGAAAAAAAGACCAGCTACCAAGAGTTACCCTTTCTACATTGCACTTGCATGCTGGTTCTTTTCAATATGATCAGCCTAAGTTACATTCAACTGTAGTGGAAGCTGTTCATAGTGGTTCTAAGGCATACCAGGAGAATTCCTTGGAGACACTAGAAACAGTTGGTGCATTTCAGAAACTGCCAATGGTGATGCCTTCAACAGATTTACTTTCTTCGGCGCTACGAAAGGCGAGAAACGTTTCTGCTACAAAGGGTATTATAAATATTGCTAAGCGAGAGAGAAATAAGGGGGCGAAGCAACTAGATACTTTAATGAAAGAATTAGCTGTTCCTCTAAGAGTGTACATTGAGAGCTTTCCTAAAAAGCGGTACTTGCATCCATATGAACGATCACTTATTTATTTGACTTTTGGAGATGGAAATTACGAGGAGGTGTTGAAAGCTGTTGATGATCTCAGAAAGAAGCTCCTATCCATTGGAAAGCAGCATGCATCCCTTTGTGCCCAGTCTTCATCTAAGCGTGAAGCTGAAGAAAGATTAACGAAGGGCCTCAAGGTGCTTGAAGAAGTTTTCAGACTTGAAAAAAATGCCATTGATAATTTAGTATATGTTGCAAAGACACTGCGTGCTATGCCTGTGGTGGACCTACAAATACCGACTCTCTGCCTGGTTGGAGCACCTAATGTGGGAAAATCTTCCCTAGTTCGCATACTTTCAACAGGAAAACCAGAGGTTTGCAACTATCCTTTTACCACAAGGGGAATTCTGATGGGACACATTATTCTAAACTATGAACGTTTTCAGATAACTGATACCCCAGGTCTACTTAGAAGACATGATGATGACAGGAACAATTTAGAAAAGTTAACACTTGCTGTCCTTGAACACTTGCCTACGGCTGTATTGTACGTTCATGATCTCACAGGAGAATGTGGGATCTCACCAGCTGATCAGTTCATCATATACAAAAATATAAAAGAAAGATTTGGGAATCATCTTTGGCTTGATGTTGTCTCTAAAAGTGATTTATTGCAAGAGCCAAAAGGCTGCATTTTAAAGGATGATTATGATGATGTCAGAAGATACAAAGAATTTGGACCATCCGATGCGATATGGGTTTCGGTCATGACCGAAGCTGGTGTCAGTAAGCTGAAGTCTAGAGTCAAAGATGTGCTCATCTCACAGAAGGATAGGCTGAGCGGTAACTGCAGCCATGCAGAATGTGAAAGTTAGGGTTTTTATTGCATTTACCGTTTTATTTTAGCTTGTTTTTTATTTATGCTAATTGACCTTTTGAATAGTCTTTAGCTATTCTGATGCTACTAATTCAAGATTGATATTCAAATTTGATCATGTTGG

Network for GWHGAAEX013804

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02421.17	FeoB_N	248	304	2.20E-08
PF06858.13	NOG1	313	369	4.80E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06943	NOG1	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0005525	Molecular Function	GTP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.150
SRP064423	SRR2545915	Juvenile tuber	6.540
SRP108465	SRR5643513	five period of Gastrodia elata	3.620
	SRR5643514	five period of Gastrodia elata	3.600
	SRR5643515	five period of Gastrodia elata	3.530
	SRR5643524	five period of Gastrodia elata	3.260
	SRR5643525	five period of Gastrodia elata	1.860
	SRR5643528	five period of Gastrodia elata	1.180
	SRR5643658	five period of Gastrodia elata	1.520
	SRR5643659	five period of Gastrodia elata	3.050
	SRR5643660	five period of Gastrodia elata	2.620
	SRR5643661	five period of Gastrodia elata	2.610
	SRR5643662	five period of Gastrodia elata	3.420
	SRR5643663	five period of Gastrodia elata	3.080
	SRR5643664	five period of Gastrodia elata	4.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.830
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.070
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.730
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.400
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.410
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.940
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.410
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.540
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.620
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.620
SRP279888	Gastro	Gastrodia elata tuber	4.45
	Juven	Juvenile tuber	5.64
	Mother_Gastro	Mother tuber of Gastrodia elata	4.54
	Mother_Juven	Mother tuber of Juvenile	4.90