Detail information of GWHGAAEX013805/evm.TU.scaffold_54.12


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG23140Translation initiation factor 3, subunit b (eIF-3b)
nrgi|743827177|ref|XP_010933521.1|0PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Elaeis guineensis]
Swissprottr|Q9C5Z1|EIF3B_ARATH0Eukaryotic translation initiation factor 3 subunit B {ECO:0000255|HAMAP-Rule:MF_03001}
trEMBLtr|A0A059AHV4|A0A059AHV4_EUCGR0Eukaryotic translation initiation factor 3 subunit B {ECO:0000256|HAMAP-Rule:MF_03001, ECO:0000256|PIRNR:PIRNR036424}
TAIRAT5G276400translation initiation factor 3B1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000059481607498458+
Transcript Sequence

Network for GWHGAAEX013805

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1831381.90E-07
PF08662.10eIF2A4066062.80E-62
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03253EIF3B RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0006413Biological Processtranslational initiation
GO:0003743Molecular Functiontranslation initiation factor activity
GO:0003723Molecular FunctionRNA binding
GO:0003676Molecular Functionnucleic acid binding
GO:0031369Molecular Functiontranslation initiation factor binding
GO:0005515Molecular Functionprotein binding
GO:0005852Cellular Componenteukaryotic translation initiation factor 3 complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms110.220
SRR2545915Juvenile tuber123.510
SRP108465SRR5643513five period of Gastrodia elata116.830
SRR5643514five period of Gastrodia elata117.860
SRR5643515five period of Gastrodia elata110.960
SRR5643524five period of Gastrodia elata111.720
SRR5643525five period of Gastrodia elata87.510
SRR5643528five period of Gastrodia elata98.470
SRR5643658five period of Gastrodia elata81.740
SRR5643659five period of Gastrodia elata137.460
SRR5643660five period of Gastrodia elata132.540
SRR5643661five period of Gastrodia elata138.140
SRR5643662five period of Gastrodia elata131.670
SRR5643663five period of Gastrodia elata129.230
SRR5643664five period of Gastrodia elata136.090
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1116.840
SRR6049655Rhizomagastrodiae_C368-T10_good_1124.450
SRR6049656Rhizomagastrodiae_C368-T07_good_1123.840
SRR6049657Rhizomagastrodiae_C368-T07_good_1121.270
SRR6049658Rhizomagastrodiae_C368-T04_good_1111.090
SRR6049659Rhizomagastrodiae_C368-T04_good_1117.000
SRR6049660Rhizomagastrodiae_C368-T01_good_1126.420
SRR6049661Rhizomagastrodiae_C368-T04_good_1126.090
SRR6049662Rhizomagastrodiae_C368-T01_good_1128.540
SRR6049663Rhizomagastrodiae_C368-T01_good_1129.780
SRR6049664Rhizomagastrodiae_C368-T10_good_1133.940
SRR6049665Rhizomagastrodiae_C368-T10_good_1133.940
SRP279888GastroGastrodia elata tuber 159.72
JuvenJuvenile tuber253.13
Mother_GastroMother tuber of Gastrodia elata 105.71
Mother_JuvenMother tuber of Juvenile 141.30