Gene detail

Detail information of GWHGAAEX013806/evm.TU.scaffold_54.13

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0724	4.00E-64	Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains
nr	gi\|254553517\|ref\|NP_001131529.2\|	1.54E-74	LHY protein [Zea mays]
Swissprot	tr\|P92973\|CCA1_ARATH	1.00E-64	Protein CCA1
trEMBL	tr\|B6SPA3\|B6SPA3_MAIZE	6.00E-75	LHY protein {ECO:0000313\|EMBL:ACG26686.1}
TAIR	AT2G46830	4.00E-64	circadian clock associated 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	499687	505077	+

Transcript Sequence
>GWHTAAEX013806 AAAAAAAAAAAAAAAAAGGTGAGGCAAAAATTACCTGACCTAACCCAATGCCTGCTTGTGGCCGAGGGCGCGCCACATCGCGCAACGCCAGAAGACGAAAGAGACACGTAGTGGTTCATCCCTCGCCCCGAAACGTTCTCGGCCTCAAATTATCGCGCTTTCCCCTTTTTTTAATGCCTTCCGATGAGCTGAAGCACACCAGAAACTTTACTGGCTCTTATTTTTTCTCCTGCGGAAAATCTGAGCTAGCGAGATGAGTTCGTGACTGTGGATTTAGGTTTCCGATCTTTGTTTGCTTCGATTCGTCGGAAGAACATGGCGGCCTGAACGATTTCTCTCTTTTTGATTTTGTAGAAGTTGTGTTTTGCGGATGGAAATGTCGAGCTCGTATACAGAAGAACTGAGCGTGAAGATGAGGAAGCCCTACACGATCACGAAGCTTCGGGAGAAGTGGACTGAGGAAGAGCACAGCCGTTTTCTTGATGCTTTGAAGCTGTACGGTAGGGCTTGGCAGCGCATAGAAGAGCATATTGGTACTAAGACTGCGATCCAAATCAGAAGCCATGCTCAAAAATTCTTTACAAAGTTGGAGAAGGAAGCAGTTACCACAGGCACACCTTTGGGGCAAGCTCATGATATAGATATCCCTCCTCCTCGGCCCAAAAAGAGGCCCAGCTTTCCATACCCTCGAAAAACCGGCATCTGCCCCATCCCTCCATCCGCCGAAGCTGCAAAAACCATGGATTCTGGCTTGGGGAAGAATTCAACTCAAGAGCTATCTGATGCATCAAATGATCAACATTCTGATGGGGTTCAGTGTTCTTCAGCAGCTCTTAATTTCTTCAAGGATATCCCAACTCCTTCCACCTCTTCCTGGGATAACAATGGCCTCAGAAAAGGATTCAGTTTCAGGGAGTTTGTTCCCATGGCAGCACAGCCGAAAGAGCCGCATTCCCTGAAAGGATCTTCCCTGACAGCTGAGGTAATCATGGAACCAAGCTCCACTAAGCAGGAAAAGAAACTATCTCCAGATGTTGAGGCACAACCCGCATCATCACACCCCATGGCTCCATTATCTCCTCCATTCCACGCCGGTTCTTCATCGGTTTCCCATATTTCTCATCCATGTCCCTCTTTCCCGCCCTTCTCACAGTTTATCAGAAACGGCAAAGAGTTATACGGATCATTCCTTGGCATCTCATCCGCCTTTTCAAACCTTCTCGCTTCGTCCCTGCTCCAGAACCCAGCGGTTCACGCGGCTGCATGCATGGCCACCTCTGTCTGGCCGTCCGACGAAATGATCCCTTCAAACATGGCGGCCGTTGCCTCCGCCACGGTCGCCGCCACGTCAGCTTGGTGGGCGACCAATGGGCTAGTCCCATTCTTTCTTCACGCCCAGCACGGGTTCGAATTTGCTGCTCCGCCGACTCCAGCCGTTCCTTCCGAACAAATGTGCCAGACGGAAGCGCATCTGAATCTCCCGTCAAAACTGGCTTTTTCTCCTTCGTCGGATGAGGAGCAGATGGAGGCAGGGGCTTCGATTTTGATGGCCGGCACCAGCGGGAAACAGCAGGAGCGTTCTTCCTGCGGCTCCAACACCACGTCCGGGAGCGAGACCGAGACGGATGCTGCGCCCAGGAGAAATGCGGAAGCCAATGACGGCGACGAATTCAAACCAGTTCAAAATCTTCAGCCGCCCGGGGAGGCCTGCAACACCCGCCGTCCAAGGAACTGCTTCTGCTTCAATGAGAATTGGAAAGAGGTCTCCCAAGAGGGACGCCTTGCATTCCAGGCGCTCTTCGCCAGAGACGTTCTGCCGCAGACCTTCGCAGCCCAGCACTCTAAATTAGAAGAAATGGGACAGGCTAAGGAGGAGGACAATTGGGTTGGAAGGGTGCGCAGAACCGGGTTCAAGCCTTACAAACGGGACTTCGCCGGTTCGGCAATTGATCAGACCTGCAGCATCAGCAGCAGCAACAAGAGAGCGAAGCTTCAGCCTGATAATAAATACATGCCTCCTCAGCCTTCCTGCTCTTCTCGCTAATCAATTTGTTGAAAGACTTCTGCCCTTTGCTTTTTAATTTGTGTATGAAGGCATGGTTAGCACATTTTATTTCTCTATTTAAAATGAATAATGTTTTTTAACTAAGCATCTCTGGCAGTTCCATCATGAAATTTAAAGGCATTAAAAATAAAATTATACCTGCGTTCCAAATTTTGACTCATTCTAAATATATAAAATCAAATTCTGCAAATTTTTAAATAAAACATAAAAAGTGCATTTCAAACTATCTCAAAATATATAAAATAAAATTTGAAATTAATCTATTCAACCGAATTCAAATTGAGTGCCTAAGCTTATAGGTGGAAAACCAAATTGCTCATTTTAATCTCGTGTGTGCGAATGTGCATGGGCGTGCTTGTGTGGGCTCACATCTCGCTATGCGCAGTGCTGCGCAGGCCAATATTTGGCCTCAAAATTGAACTCAATTGCTTTGGATCATTAAACACCTTAATGGTACTTCATACACAAAAACTACTTAATTTACTT

Network for GWHGAAEX013806

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	25	68	2.00E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
K12133	LHY	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.910
SRP064423	SRR2545915	Juvenile tuber	19.510
SRP108465	SRR5643513	five period of Gastrodia elata	19.840
	SRR5643514	five period of Gastrodia elata	23.420
	SRR5643515	five period of Gastrodia elata	23.130
	SRR5643524	five period of Gastrodia elata	19.950
	SRR5643525	five period of Gastrodia elata	29.760
	SRR5643528	five period of Gastrodia elata	18.460
	SRR5643658	five period of Gastrodia elata	38.320
	SRR5643659	five period of Gastrodia elata	36.740
	SRR5643660	five period of Gastrodia elata	39.980
	SRR5643661	five period of Gastrodia elata	42.290
	SRR5643662	five period of Gastrodia elata	27.230
	SRR5643663	five period of Gastrodia elata	51.760
	SRR5643664	five period of Gastrodia elata	35.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.010
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	22.990
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.600
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	26.550
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.570
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.010
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.070
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.060
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.840
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.840
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.840
SRP279888	Gastro	Gastrodia elata tuber	25.31
	Juven	Juvenile tuber	36.35
	Mother_Gastro	Mother tuber of Gastrodia elata	20.86
	Mother_Juven	Mother tuber of Juvenile	26.42