Detail information of GWHGAAEX013808/evm.TU.scaffold_54.15
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|336121034|ref|YP_004575809.1| | 6.00E-61 | diphthine synthase [Methanothermococcus okinawensis IH1] |
| KOG | KOG3123 | 1.00E-151 | Diphthine synthase |
| nr | gi|672175001|ref|XP_008807572.1| | 9.44E-163 | PREDICTED: probable diphthine synthase [Phoenix dactylifera] |
| Swissprot | tr|O81769|DPH5_ARATH | 4.00E-152 | Probable diphthine synthase |
| trEMBL | tr|M0S5S9|M0S5S9_MUSAM | 2.00E-160 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P06880_001} |
| TAIR | AT4G31790 | 1.00E-151 | Tetrapyrrole (Corrin/Porphyrin) Methylases |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 535033 | 546845 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013808
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00590.19 | TP_methylase | 1 | 242 | 2.30E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0017183 | Biological Process | peptidyl-diphthamide biosynthetic process from peptidyl-histidine |
| GO:0008168 | Molecular Function | methyltransferase activity |
| GO:0004164 | Molecular Function | diphthine synthase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 60.750 |
| SRR2545915 | Juvenile tuber | 41.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.880 |
| SRR5643514 | five period of Gastrodia elata | 18.850 | |
| SRR5643515 | five period of Gastrodia elata | 19.000 | |
| SRR5643524 | five period of Gastrodia elata | 17.820 | |
| SRR5643525 | five period of Gastrodia elata | 38.120 | |
| SRR5643528 | five period of Gastrodia elata | 33.550 | |
| SRR5643658 | five period of Gastrodia elata | 37.910 | |
| SRR5643659 | five period of Gastrodia elata | 20.760 | |
| SRR5643660 | five period of Gastrodia elata | 23.850 | |
| SRR5643661 | five period of Gastrodia elata | 22.520 | |
| SRR5643662 | five period of Gastrodia elata | 26.460 | |
| SRR5643663 | five period of Gastrodia elata | 25.500 | |
| SRR5643664 | five period of Gastrodia elata | 24.990 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.880 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.070 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 26.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 41.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 35.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 36.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 35.620 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 35.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.890 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 27.510 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 22.980 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 22.980 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 34.25 |
| Juven | Juvenile tuber | 33.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 33.99 | |
| Mother_Juven | Mother tuber of Juvenile | 29.60 |