Gene detail

Detail information of GWHGAAEX013811/evm.TU.scaffold_54.18

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|256830203\|ref\|YP_003158931.1\|	7.00E-97	cyclopropane-fatty-acyl-phospholipid synthase [Desulfomicrobium baculatum DSM 4028]
nr	gi\|672144904\|ref\|XP_008796355.1\|	0	PREDICTED: uncharacterized protein LOC103711840 isoform X2 [Phoenix dactylifera]
trEMBL	tr\|F6H8S1\|F6H8S1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48613.1}
TAIR	AT3G23510	0	Cyclopropane-fatty-acyl-phospholipid synthase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	623571	699703	-

Transcript Sequence
>GWHTAAEX013811 GGCCCGTTTTGCTCTAATTTTCGCAAGCGCTTTCACGTGATTTTGGGGCCATCTGCTCTCTTCATTAGTTCGTCCTTGAAGTCGGTCTCCTGAAGCCTCCGCTGTTCGCCTTCATTAGATGGAGCTTCCATGGTCACATATCCAAATGCGATTGAAATGTTTGAAAAAGTCGGTGCTGAGATGGAGATCTCTGAAATGTCTTTCTCCGTAAGTTTAGATGGAGGAAAAGGTTGTGAGTGGGGAAGCCGTAATGGATTGGCTAGTTTGTTTGCACAGAAAAGTAACTTGTTAAATCCTTACTTTTGGCTCATGCTTCATGAAATCAGAAAGTTCAAAGATGATACCCTTCGGTATCTCGCAGAGCATGAGGAGAACCCTGATTTGGATCGAAGTGGAACATTAGGGCAGTTCATAAAGTCTCGTGGGTATTCCATGCTGTTTCAGAAAGCTTATCTTATTCCAGTATGCGCTTCAATATGGTCTTGTCCTTTTGAAGTGGCAATTGACTTTTCAGCTTACTCTATACTGTCCTTTTTCTGTAATCATCACCTTCTACAGCTCTTTGGTCGGCCTCAATGGCTCACATTTAAGCATCGTTCACAAGACTATGTCAATAAGTTAAGAGAAGAGTTAGAGGGTAGAGGTTGCCAAATTAAAGTGGGATGTGCAGTACAATTGGTATCTAGTACTGATTATGGTTGCTCTGTTCTCACATCAAATGGTTTGGAAGAATATGATGAATGTGTAATTTCGACTAATGCACCAGACGCTGTTAAAGTTCTTGGAGAACAGATATTGTTTGATGAGTTGAGAGTTCTTGGTTCTTTTCAGTATTTTTATAGTGACATATATCTTCATCGTGATATAAGTCTGATGCCCCAGAACCAATCAACATGGAGTGCTTGGAATTTTCTTGGTACTACAGAAAATGGTGTTTATCTGACGTATTGGTTAAATGTACTTCAGAATCTTGAGTTCACCGTCGAACCATTTCTTGTGACTCTCAACCCACCCTTTACTCCGAAGCATAAGGTGCTTAAGTGGAAGACGGGTCATCCTGTACCATCCGTTGCAGCCTCAAAAGCCTCTCTTGAACTTGGCAAAATCCAGGGTAAAAGGAAGATTTGGTTTTGTGGGGCATATCAAGGCTATGGCTTTCACGAAGATGGGCTAAAGTCTGGATCCATCGTTGCTTATAATATACTAGGAAAGGAGTTAAAACTACTAAAAAATCCACGACATATGATTCTTTCTTTGACGGAGGCTGGAGCAAGAATGGTGGTGGCTAGATTTCTGAAACGCTTTATCAAAATCGGTGCTTTGACGTTTCATGAAGAAGGGGGTACAATTTTTGATTTTGAAGGAGTCAATAAAAGCACTCACGTGAGATCTGTCCTGAAAGTGCATGATCCTTTATTTTACTGGAAGATTGCTACAGAAGCTGATATAGGCCTTGCAGATGCTTACATTAGTGGATATTTTTCTTTTGTTGATGAGAAATATGGTCTTCTTAAGCTTTTTTTGCTTCTTATAGCTAACCGTGATCTGAAAAATTCTTTTAACAATAACCAAAATAATAGGGGCTGGTGGACGCCTTTACTTTTAACTGCCGGAGTTGCATCTGTTAGGCATTTTATCCAGCATAGCTCAAGGAAAAATAACCTTTCTCAAGCCCGCCTCAACATATCTCGCCATTATGATCTGAGCAATGATTTTTTCTCTTTATTTTTAGACGAGACGATGACTTACTCCTGTGCATATTTCAAGAGTGAAAATGAAGACTTGCAGGTTGCACAACGGTGTAAACTCTCTCTTTTAATTGATAAGGCTATGATTGAATCTAAGCATGAAGTTCTTGAGATTGGTTTCGGATGGGGTACCCTTGCAATAGAAACAGTGAAGCGAACAGGCTGCAAATATACTGGCATCACCTTATCACTGGAGCAATTAGATTATGCAAAAAGAAAAGTAAAGGAAGCTGGATTAGAGAACAAGATCAGATTATTGCTGTGCGATTATCGCCAACTTACAACCTCTCAAAAATATGACCGGATTATATCTTGTGAGATGATAGAAGCGGTTGGCCATGAATACATGGGACAGTTTTTTCATTGCTGTGATGAACTTCTTGCTGTGCACGGGGTAGTTGTTCTGCAGTGTATTTCAATTCCTGATCAAAGATATCAGGAGTACAGAAGAAGCTCTGATTTTATAAAGGAGTATATTTTCCCCGGTGGATGTCTTCCTTCTTTGAATTCCATTACCTCTGCCATGACTGCTTCCTCTAAGCTCTGCATTGAGCATGTGGAAAATATTGGCATACATTACTACCAGACACTTAAATACTGGAGAAGAAATTTCATGGCTAACAAGAGCAAGATTCTTGCACTCGGGTTCGATGATAGGTTCATACGAACGTGGGATTACTACTTCAATTATTGTGCTGCGGGTTTTAAATCTCTTACACTTGGAACTTATCAGATTGTTCTTTCACGCCCCGGCAACACGAACGCATTTAGCAATCCATATGGCGTCCACGTCTCTCCCTCAAAGGTGAGAGGACTTCTCAATCAATAAATCAAGAAACCCAAATCCCATTTTTTATTAGGTTCTTTAACATAATGGCCTTCTGCATATGAATAAACTGTTTTGATTTTGTTAACTTCTGCAAAATAGTAAAACGTCTTTGGCTTCCATCTCTGCTATAAAAAAATTTGTTTGAAAATGTATTTTTTTTGTTTCTTCACTTTCAGTTTGTCATGAAGTATGATATACTTAGTATGTTATTGGATAGTTGACAACTATTGGAAAGGGGGCCTTACTTTATAGGATTTGGGGGGGTGGGTGTTTTTTTTACTGGGTTTCATGCCCAATCAATTCATGTCTTTTATGATTCATAAGTGCACCCATAGCTAAGTCTTGGCACCGGCCTGTTGAGATGGGGAATGGATCAACCTTTAAATGTTATTTTTGGCATTTTAATATTTCA

Network for GWHGAAEX013811

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02353.19	CMAS	513	784	4.00E-82

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	64.240
SRP064423	SRR2545915	Juvenile tuber	94.840
SRP108465	SRR5643513	five period of Gastrodia elata	44.190
	SRR5643514	five period of Gastrodia elata	51.280
	SRR5643515	five period of Gastrodia elata	47.870
	SRR5643524	five period of Gastrodia elata	61.150
	SRR5643525	five period of Gastrodia elata	25.310
	SRR5643528	five period of Gastrodia elata	30.190
	SRR5643658	five period of Gastrodia elata	28.430
	SRR5643659	five period of Gastrodia elata	58.050
	SRR5643660	five period of Gastrodia elata	58.350
	SRR5643661	five period of Gastrodia elata	55.620
	SRR5643662	five period of Gastrodia elata	33.130
	SRR5643663	five period of Gastrodia elata	46.160
	SRR5643664	five period of Gastrodia elata	31.930
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	91.220
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	53.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	104.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	72.920
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	102.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	90.780
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	95.110
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	93.530
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	121.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	145.310
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	90.990
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	90.990
SRP279888	Gastro	Gastrodia elata tuber	38.54
	Juven	Juvenile tuber	52.51
	Mother_Gastro	Mother tuber of Gastrodia elata	26.82
	Mother_Juven	Mother tuber of Juvenile	26.77