Gene detail

Detail information of GWHGAAEX013812/evm.TU.scaffold_54.19

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672123914\|ref\|XP_008785327.1\|	0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Phoenix dactylifera]
Swissprot	tr\|Q9SZL8\|FRS5_ARATH	6.00E-154	Protein FAR1-RELATED SEQUENCE 5
trEMBL	tr\|J3MHI6\|J3MHI6_ORYBR	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB06G34800.1}
TAIR	AT4G38180	2.00E-153	FAR1-related sequence 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	703581	722471	-

Transcript Sequence
>GWHTAAEX013812 CCGGACACAAAATTTTAATTATTTATTTTTTCTTAATTTATTTAAGGTTCTTTTTAACAAGATGCGATTTTACCCAAATCCTCCCTTCTCACCGACGCCCTTCAAAATCCCTAAACCTCTCCTCTGCGATTTTGACATATCGAGCTTCTCTTTGTCCATGCTCTTCTCTACCGGAGCAACCTACCATCGGTTGCCGGCTTAAGAAACAGTGACATGTCTTTGCTTGCTGCTGATAGCATTTTTGTGTTTGTATGGATTCTGCTAACAGCTGCGCTATAAAAGGTAAATTTATGTGCTACTCACATAAAAAGGACTTCTTCAAGTTAGAATTATAATGATGGAAGGGACCTTAAATGATGAGTATAACTTATTAAGGGACGGTTCCATGGATCTTAATGACAACTCAAGTGTTCCTCCAATGGCCTTGGCTCTTGTCGCTTTAGGAGCTGAACTGAATGCCCCAGTCCCAGCTCCGCTGCTCCACATGGACTCCAACAATATTGGGGAGCCAGCCATAGGAATGGAATTTGACAGCGATGAGGCAGCAAAGGAATACTACATAGCTTATGCAAATCATGTGGGGTTTGGTGTTCGAATGAATAAGTCACGGCGATCGAGAAAAGATGACACAGTTATCATGCGGCGTTTTGTGTGTACTCGGGAAGGATTTCATTCTAAGAGGGTGATCTACGATGATGGAAAAAAGAAGAGAAAGCGGGGAACTACAAGAGAAGGATGCTTGGCCATGATTGAAGTCATTCGGAAGGATCATGGTAAATGGTTAGTTACTAAACTTGAGACTGAACATACTCATATGGTTGCTTTACCCGATAAAGTCCGCCCACGTGCTGATAATTCTATGATCTCCCCTAATTTGGCGCCAACATTTAGCGAGCCGGGTGGGTTCAATAACTTGAAGAACTTCAACAGGGGGATAAGGGTCAATCCCTTTGGGGAAGGAGGTGAGGCACAGGGCCTTCTAGAGTATTTGAAGAGGATGCAAGCCGAGAACCCGGCATTTTTTTATGCAATCCAAGTCGATAATAACAATTGCCTGACCAATGTTTTCTGGGCCGATGCCAAATCTAGGGTGGCTTATCAGCACTTTGGTGATGCCGTGACTTTTGACACAACGTACAAAAAAACAAAGTACATGCTGCCCTTTGCCACCTTCAGAGGGGTGAATCATCATTTGCAGTCTGTTACATTTGGCTGTGCCTTGCTAATGGATGAAACAAAGGGCTCATATGTATGGCTTTTTGAAACCTGGCTTGCTGCAATGGGCGGCTGTCATCCTCTCTCATTATTCACCGACAGGGACAAGGCCATGGAAGGTGCTATTTCAAAGGTGTTCCCTAGAACCCGCCATTGTTTCTGCAAGTGGCATATATTTAGCCGGTGTAAGCAGAAGCTGTTCGACGCCTATATGAAATACCCTGCTTTGAAAAGAGAGCTGAAGGACTGCATCAACGTCTCCGAAACACCCGACGAGTTCGAAGCTCGTTGGGATTGCATTCTCGATAAATACAGCTTACGGGAGAATTCGTGGCTGCAATCTCTGTACAAGATTCGCCCGCAGTGGGCTTCAGTGTATCAGAAGAACTTGTTCTTTCCCGAGCTGTCTGCATCCCAAAGACCTGAAAGCCTGAATAAATTCTTCAAGAGAAACTTCAGCACTAAAACCTCTTTGCTGCTGTTCATCTCAAAATTTGACCAAGCCACGGCATGTCAGTACGAAAGGGAAGCACAAGAAGACCTTGTCGCTATGTATTCCAAGCCTCTCCTGAAGACGCCGTCGCCCATCGAACGGCAGGCGGCGGATACGTACACGAATGCGGTATTCGAGAAGTTTCAGGAAGAATTCGTAGAATCGCTGGGGTTTTACGTTGATGAAATCGACAACGGCTCTGTCAGCAAGTATAGTGTGACGAATGAAGCGAACGGCCATAGGAGTTACATTGTCTGTTTCGATGAATCCGCCAAAAAGGCGAGCTGCAGCTGCTGCAAGTTCGAACGCTGCGGCATACTGTGCAGGCATGTTCTGAGAGTCTTTTTTATAGTTGGAGTCCGAACCCTCTCCGAGGCATATATACTTAGGAGATGGACGAGGAATGTATTGAGCGATGTAGTCCTCGAAGAAGGCGTTGCGGAAACCGGGCTCAGTTTCCCGGAGTATCTGATGGCCTGGCACAATGATCTTTGTCTTGATGCTGTTAGATTTAGCGTGGAAGGTGCTGCGTCCTCTGAGGCATATAGAGTGGCTAAAATGGCACTGCAGAAAGCTTTTGCTGAAGTTATATCTGCTAAATGCATTCAGAAGAAAGGGCAGCAGAATCTGCAGAGGTTGGCAAGGCTACAGAAGATGCAGTTTAAGGTTCCTTTGCCTAAGCTGCAGCCCAAGAAATGCCGGCAACCCGACAGAGGCAACAGCGACACGACCCAAAGAAATCCCGGCGATGATGCGTTGTGAGAAGGGATATCTGCATTCTGAACCACTCAAAACGTTGGTGGTAGTAATCATCGAAGGAGAATGCTTTGCTGAGTCACAAATAGTCCAATACATGAGGAGGTAGTCAAAGATAAAATATACGATGTTTCTCCTCTCTTTCTATCCAAACAACCTACGTTTATTTTTTTCACGAATTTTGAACTCAACTCTGGGCAGTGTAGCAGCAAGGCTCATTTTCAAATAAGCACACAGCTCTTTTCGAAACGGGGTGCACTATTGAGGGTGGCTCTTTGTAAATATTCAAGTGTTGGGTGGTATTTCTAAAACAGAAGGGTTGGTGATATCCCTAAATGCCAGACAGAACGAAACATTCAGAGGTAATACGGCATATTGGAGCAAGGCTTGGATCTTATTGTGGGATGTGAGTGCTGGGGTATATATGTGAATGTGTTAGGGTTTGTGTGTGCATGAAAATGTTACATTGAGTTCTTGAGGGGTTTTGTGTTTGGAGGAGAAGAAAAGAAGCCATCTTCTTTGAAGCTAAAAGCTCTTTTTTGCTTATAGAGTTGTGAGTTTGTAATCCATTCTTCTGCATAATGAATTTTTTTATAGTAGTGGCTCCATAAGTTTGTGGTTTTCCATATAAGCTTTCTGAATTTGGATGTGATTGATCTTTATTTTGGATATACTTGTTTTTTGAACAATGTGTGGCAATTTGGTTTGCTTATTTTTGCTTTGCCTGTAATTGAG

Network for GWHGAAEX013812

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03101.14	FAR1	73	162	6.50E-26
PF10551.8	MULE	262	353	1.90E-27
PF04434.16	SWIM	547	573	1.10E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	FAR1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	21.380
SRP064423	SRR2545915	Juvenile tuber	16.180
SRP108465	SRR5643513	five period of Gastrodia elata	12.770
	SRR5643514	five period of Gastrodia elata	14.480
	SRR5643515	five period of Gastrodia elata	13.580
	SRR5643524	five period of Gastrodia elata	14.330
	SRR5643525	five period of Gastrodia elata	13.850
	SRR5643528	five period of Gastrodia elata	9.270
	SRR5643658	five period of Gastrodia elata	11.400
	SRR5643659	five period of Gastrodia elata	18.070
	SRR5643660	five period of Gastrodia elata	18.040
	SRR5643661	five period of Gastrodia elata	18.250
	SRR5643662	five period of Gastrodia elata	19.470
	SRR5643663	five period of Gastrodia elata	19.140
	SRR5643664	five period of Gastrodia elata	20.420
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.940
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.220
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.720
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.110
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.260
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.960
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.930
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.750
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.450
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.640
SRP279888	Gastro	Gastrodia elata tuber	22.22
	Juven	Juvenile tuber	18.87
	Mother_Gastro	Mother tuber of Gastrodia elata	14.36
	Mother_Juven	Mother tuber of Juvenile	20.06