Gene detail

Detail information of GWHGAAEX013813/evm.TU.scaffold_54.20

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743883136\|ref\|XP_010909331.1\|	2.26E-174	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At2g33490-like [Elaeis guineensis]
Swissprot	tr\|O22799\|Y2349_ARATH	9.00E-122	Uncharacterized protein At2g33490
trEMBL	tr\|A0A0A0K9I2\|A0A0A0K9I2_CUCSA	2.00E-155	Uncharacterized protein {ECO:0000313\|EMBL:KGN46425.1}
TAIR	AT3G26910	3.00E-94	hydroxyproline-rich glycoprotein family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	732723	739617	-

Transcript Sequence
>GWHTAAEX013813 GCGGAGGAAAAGGGGTGATTGACCAGACGGACTTTCCTGATATTCTTACCCCCAAAAATCTCCATTCTACCTCAACCGCTCACCCATGGGCGTATACTTTAACGACATTCGTTCCTTACTCGGCGAGATCATCCCTTCGACCCGACTGAAGACCACTGATATTCGCACCCCCTAAACTAGGGTCCATTTTTCGCCAGGAAAAGCCGCGAACACAGAAAGGCGAAGGAGCCGTTCCTTTCTTCTTCACTCTCTTCGAAGGAGTCGTAATCCTTTTCTTCTCTTTTGGGGGGAATGAGATCGTCTCTGAGGAAGCTGCGGGGTTTGGGGATTCAACGCTGCGAGGCGAGGGAGAAGCGGGAGCATCGGCCGCGGGCGAAGCTTGATGAGCTCGTCCAGGCCGTTCAGGACATGCAAGACATGAAAAGCTGTTATGATGGTTTACTGTCAACAGCTGCTGCCACTGCAAATAGTGCATTTGAATTCTCTGAAGCTCTACGTGAGATGGGCACATGCCTGCTTGAAAAGACTGCACTGCATGATGATGAAGATAGCGGTCGGGTTTTATTGATGCTCGGGAAAGCACAATTTGATATTCAGAAGCTTGTTGATACGTATCGTACTCATATTATTCAGACCATCACAACGCCATCGGAGTGCCTTCTTGGGGAACTTCAGATTGTAGAGGAGATGAAACAACAATGTGATGATAAACGTGAATTCTATAAATTGATGTTAACTGCACCTAGAGTAAAAGGAAAATCAAGGAATATTAAAGGGGAGGCAGTTACTCTCCAGCAGCTGCAAGCAGCCCGAGAAGATTATGAGGAGGATACAAATCTTTTTATCTTCCGCCTTAAATCATTGAAGCAGGGTCAATCAAGAAGCCTTCTCACACAGGCTGCTCGACATCATGCTGCACAGTTGAATTTCTTTAGGAAAGGACTCAAGTCATTGGAACTGATTGAACCACATGTTAAAGCTATCACAGAACAGAATCATATTGACTATCATTTCCGTGGGCTTGAAGATGATCACACAGATTTTGATGATGATGGTGGTTCCTTTATTTCTGATAGTAGCGAAGATGGTGAACTTTATTTTGATTACGGACTGAACGAGCATGCTTACAGTTCTCTTGCTACAAATTCAATGGAGCTAGATCAAGTTGACAGTATACCAGCAAAGACTTCTTTGGAATTCTTACAGGAAGTGGTATCAAAAAAGCCGGCGGAGCTTCTATTTCGCAACGAAAAGCCCAATCTAAGCAGCCAATCTGCGCCAATTTTCGCAGATATGAAGTTTGATATATCTGACAGGATAAAGGAGACACCTCCTCAGTCTACTAGAAAGTATCACACTTATGCCCTGCCTACACCAGTGGAAGTGAGGAACTCTTTAAAAATTTCATTTTCTTCAGGCCTCCCTAAAACAAATACCTTTGATCAAAAGCCCATTTCTCCAATGGAGCCACATAAAGCCTTCTCTGGTCCCGCAATATTGCCACAAGCACACACATCTTCTGTTCCTGATCCCAAGCAGCTGAAATGGCAAGCCTTCTCAGGTCCAATTATTGGAAAATCTGGAGCCACCAGCATCATTCTGAAAGCTGAGGATTCCCCAGTGCTTTGGGCACTTCATGAGCTTCCCAGACCTCCGACCTCTCTGGCGCAGCTTCCAGGGATTGGCCATTCAGCACCCTTAGTTTCTCGGGGTCAGGAGGTTCAAACTGGTAAAGCATTCCCGGCAGCTTCGCAGACGGCCTCGCCACTCCCGGTGCCGCCGCCCTTTATTCCGAGGAGCTTTTCCATACCTTACAGAGGTGAAAGGACCCCGTCAGGAACGGTTAACAAGCCACTGGAGCTGCATCGAAATTTGAATCTCATCGGAGAGGTTGATTCTCCTCCTCTAACTCCCTTATCGCTCAAAAACTTTGGAGCGGCATCTTCGCTTAAGGGGCCCGTATGACCGAGAAGCCTTTCGAAGATGCATTCTCCTGAATATTGTTAGATTTGCTTCTCGTGAAATGCTGATTTTGTGGATGGTATTGTGGCTCAGCAGATGAGGGTTTGAACCTTGACAGGTCAAAGTTTTAAATTCCGTCCGCTACATATTTGTCTTATATGATTAACTTCTTCAAAAAAACAAAAGCTGGTCTCGCAGTTTTGTTCGGTCAAAAAACTCGCCGAGAAAGGTGATTTTTCAGCAGACCGGTGATCGGGGTGCGGCTCTTGCTCTATTTCTCTTCTTTTCCCTTTCTTTGATTGATAGGCTTTCTATGTATATATATATATATATATATAGTTCATTCTTTTGTTGCTCAACTGCAACATCTAGATATAATACAATTTTGTTATTCAATGATTTTGATATTAGTTGATGCCTGAATGTCTATGATTGCCTTTTCTATTTATTTCAAGGGCATTTGATTTTCTTGTTTTCCAAAATTAGTAAGATTCTTAAGATTAAAGGCAATACTAAACAATTCTTAAGATTCTTAAACAATGGCAG

Network for GWHGAAEX013813

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.880
SRP064423	SRR2545915	Juvenile tuber	21.320
SRP108465	SRR5643513	five period of Gastrodia elata	11.490
	SRR5643514	five period of Gastrodia elata	11.280
	SRR5643515	five period of Gastrodia elata	23.740
	SRR5643524	five period of Gastrodia elata	15.310
	SRR5643525	five period of Gastrodia elata	20.830
	SRR5643528	five period of Gastrodia elata	48.110
	SRR5643658	five period of Gastrodia elata	15.730
	SRR5643659	five period of Gastrodia elata	21.840
	SRR5643660	five period of Gastrodia elata	18.200
	SRR5643661	five period of Gastrodia elata	24.730
	SRR5643662	five period of Gastrodia elata	26.870
	SRR5643663	five period of Gastrodia elata	22.020
	SRR5643664	five period of Gastrodia elata	31.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.520
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.230
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.510
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.230
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.280
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.220
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	25.670
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	24.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.240
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.240
SRP279888	Gastro	Gastrodia elata tuber	12.06
	Juven	Juvenile tuber	15.41
	Mother_Gastro	Mother tuber of Gastrodia elata	150.56
	Mother_Juven	Mother tuber of Juvenile	180.32