Detail information of GWHGAAEX013816/evm.TU.scaffold_54.23


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743834469|ref|XP_010935539.1|0PREDICTED: sacsin [Elaeis guineensis]
trEMBLtr|I1J3B2|I1J3B2_BRADI0Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI5G26017.1}
TAIRAT5G231100Zinc finger, C3HC4 type (RING finger) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000059749325839402-
Transcript Sequence

Network for GWHGAAEX013816

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module8

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.5zf-C3HC4_3469847384.20E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms36.340
SRR2545915Juvenile tuber15.350
SRP108465SRR5643513five period of Gastrodia elata4.080
SRR5643514five period of Gastrodia elata4.630
SRR5643515five period of Gastrodia elata4.990
SRR5643524five period of Gastrodia elata4.700
SRR5643525five period of Gastrodia elata5.030
SRR5643528five period of Gastrodia elata3.500
SRR5643658five period of Gastrodia elata3.930
SRR5643659five period of Gastrodia elata3.850
SRR5643660five period of Gastrodia elata5.240
SRR5643661five period of Gastrodia elata3.690
SRR5643662five period of Gastrodia elata2.840
SRR5643663five period of Gastrodia elata3.430
SRR5643664five period of Gastrodia elata4.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_16.260
SRR6049655Rhizomagastrodiae_C368-T10_good_14.230
SRR6049656Rhizomagastrodiae_C368-T07_good_16.540
SRR6049657Rhizomagastrodiae_C368-T07_good_16.600
SRR6049658Rhizomagastrodiae_C368-T04_good_17.610
SRR6049659Rhizomagastrodiae_C368-T04_good_18.030
SRR6049660Rhizomagastrodiae_C368-T01_good_17.060
SRR6049661Rhizomagastrodiae_C368-T04_good_17.090
SRR6049662Rhizomagastrodiae_C368-T01_good_15.530
SRR6049663Rhizomagastrodiae_C368-T01_good_16.220
SRR6049664Rhizomagastrodiae_C368-T10_good_15.520
SRR6049665Rhizomagastrodiae_C368-T10_good_15.520
SRP279888GastroGastrodia elata tuber 6.14
JuvenJuvenile tuber7.84
Mother_GastroMother tuber of Gastrodia elata 8.15
Mother_JuvenMother tuber of Juvenile 13.43