Detail information of GWHGAAEX013818/evm.TU.scaffold_54.25


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672197127|ref|XP_008776992.1|1.63E-68PREDICTED: zinc finger protein 346-like [Phoenix dactylifera]
trEMBLtr|M0TDJ7|M0TDJ7_MUSAM3.00E-46Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P00570_001}
TAIRAT5G611904.00E-17putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000059922355942973+
Transcript Sequence

Network for GWHGAAEX013818

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12874.6zf-met1431651.60E-06
PF12874.6zf-met2092325.30E-07
PF12874.6zf-met3023257.70E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms131.090
SRR2545915Juvenile tuber91.080
SRP108465SRR5643513five period of Gastrodia elata43.020
SRR5643514five period of Gastrodia elata36.970
SRR5643515five period of Gastrodia elata43.320
SRR5643524five period of Gastrodia elata42.130
SRR5643525five period of Gastrodia elata54.150
SRR5643528five period of Gastrodia elata73.630
SRR5643658five period of Gastrodia elata49.090
SRR5643659five period of Gastrodia elata47.160
SRR5643660five period of Gastrodia elata50.870
SRR5643661five period of Gastrodia elata49.780
SRR5643662five period of Gastrodia elata63.390
SRR5643663five period of Gastrodia elata50.810
SRR5643664five period of Gastrodia elata53.760
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_140.710
SRR6049655Rhizomagastrodiae_C368-T10_good_147.730
SRR6049656Rhizomagastrodiae_C368-T07_good_139.800
SRR6049657Rhizomagastrodiae_C368-T07_good_142.410
SRR6049658Rhizomagastrodiae_C368-T04_good_150.510
SRR6049659Rhizomagastrodiae_C368-T04_good_155.350
SRR6049660Rhizomagastrodiae_C368-T01_good_142.300
SRR6049661Rhizomagastrodiae_C368-T04_good_143.590
SRR6049662Rhizomagastrodiae_C368-T01_good_146.330
SRR6049663Rhizomagastrodiae_C368-T01_good_147.780
SRR6049664Rhizomagastrodiae_C368-T10_good_147.050
SRR6049665Rhizomagastrodiae_C368-T10_good_147.050
SRP279888GastroGastrodia elata tuber 58.99
JuvenJuvenile tuber34.55
Mother_GastroMother tuber of Gastrodia elata 61.89
Mother_JuvenMother tuber of Juvenile 53.25