Detail information of GWHGAAEX013819/evm.TU.scaffold_54.26
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428305693|ref|YP_007142518.1| | 5.00E-77 | Delta-15 acyl-phospholipid desaturase [Crinalium epipsammum PCC 9333] |
| nr | gi|573920381|ref|XP_006647793.1| | 0 | PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2-like [Oryza brachyantha] |
| Swissprot | tr|P48631|FD6E2_SOYBN | 0 | Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 |
| trEMBL | tr|J3LGG5|J3LGG5_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB02G37320.1} |
| TAIR | AT3G12120 | 0 | fatty acid desaturase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 943844 | 945013 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013819
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF11960.7 | DUF3474 | 30 | 68 | 4.50E-08 |
| PF00487.23 | FA_desaturase | 90 | 350 | 3.10E-31 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10256 | FAD2 | Metabolic pathways | map01100 |
| Fatty acid metabolism | map01212 | ||
| Biosynthesis of unsaturated fatty acids | map01040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0006629 | Biological Process | lipid metabolic process |
| GO:0016717 | Molecular Function | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.790 |
| SRR2545915 | Juvenile tuber | 41.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 114.540 |
| SRR5643514 | five period of Gastrodia elata | 90.140 | |
| SRR5643515 | five period of Gastrodia elata | 89.040 | |
| SRR5643524 | five period of Gastrodia elata | 85.990 | |
| SRR5643525 | five period of Gastrodia elata | 44.870 | |
| SRR5643528 | five period of Gastrodia elata | 53.680 | |
| SRR5643658 | five period of Gastrodia elata | 46.840 | |
| SRR5643659 | five period of Gastrodia elata | 84.280 | |
| SRR5643660 | five period of Gastrodia elata | 78.890 | |
| SRR5643661 | five period of Gastrodia elata | 97.330 | |
| SRR5643662 | five period of Gastrodia elata | 82.550 | |
| SRR5643663 | five period of Gastrodia elata | 63.540 | |
| SRR5643664 | five period of Gastrodia elata | 51.680 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 138.450 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 302.100 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 184.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 129.830 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 103.410 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 103.330 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 150.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 140.050 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 205.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 181.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 196.010 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 196.010 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 49.29 |
| Juven | Juvenile tuber | 65.75 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 77.58 | |
| Mother_Juven | Mother tuber of Juvenile | 31.91 |