Detail information of GWHGAAEX013820/evm.TU.scaffold_54.27
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|300311428|ref|YP_003775520.1| | 1.00E-61 | S-adenosylmethionine:2-demethylmenaquinone methyltransferase [Herbaspirillum seropedicae SmR1] |
| nr | gi|743852031|ref|XP_010940290.1| | 6.87E-100 | PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Elaeis guineensis] |
| Swissprot | tr|Q9M8R9|RRAA1_ARATH | 2.00E-94 | Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 1 |
| trEMBL | tr|I3SFU5|I3SFU5_LOTJA | 1.00E-99 | 4-hydroxy-4-methyl-2-oxoglutarate aldolase {ECO:0000256|RuleBase:RU004338} |
| TAIR | AT3G02770 | 6.00E-94 | Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 946555 | 947061 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013820
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03737.14 | RraA-like | 8 | 160 | 6.50E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0051252 | Biological Process | regulation of RNA metabolic process |
| GO:0008428 | Molecular Function | ribonuclease inhibitor activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.570 |
| SRR2545915 | Juvenile tuber | 6.280 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.890 |
| SRR5643514 | five period of Gastrodia elata | 10.100 | |
| SRR5643515 | five period of Gastrodia elata | 6.630 | |
| SRR5643524 | five period of Gastrodia elata | 9.970 | |
| SRR5643525 | five period of Gastrodia elata | 2.970 | |
| SRR5643528 | five period of Gastrodia elata | 5.020 | |
| SRR5643658 | five period of Gastrodia elata | 5.310 | |
| SRR5643659 | five period of Gastrodia elata | 7.330 | |
| SRR5643660 | five period of Gastrodia elata | 4.160 | |
| SRR5643661 | five period of Gastrodia elata | 5.740 | |
| SRR5643662 | five period of Gastrodia elata | 6.020 | |
| SRR5643663 | five period of Gastrodia elata | 6.680 | |
| SRR5643664 | five period of Gastrodia elata | 5.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.310 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.470 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.520 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.310 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.970 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.990 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.790 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.790 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.45 |
| Juven | Juvenile tuber | 11.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 29.56 | |
| Mother_Juven | Mother tuber of Juvenile | 16.26 |