Detail information of GWHGAAEX013822/evm.TU.scaffold_54.29
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 2.00E-38 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|672112111|ref|XP_008804104.1| | 0 | PREDICTED: phytosulfokine receptor 1-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q8LPB4|PSKR1_DAUCA | 0 | Phytosulfokine receptor 1 (Precursor) |
| trEMBL | tr|A0A096R7K8|A0A096R7K8_MAIZE | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G080537_P01} |
| TAIR | AT2G02220 | 0 | phytosulfokin receptor 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 984514 | 987875 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013822
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13855.5 | LRR_8 | 339 | 396 | 1.80E-07 |
| PF00560.32 | LRR_1 | 462 | 482 | 0.31 |
| PF00560.32 | LRR_1 | 595 | 614 | 0.6 |
| PF00069.24 | Pkinase | 761 | 1024 | 8.90E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-Xb-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.530 |
| SRR2545915 | Juvenile tuber | 7.980 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.940 |
| SRR5643514 | five period of Gastrodia elata | 8.950 | |
| SRR5643515 | five period of Gastrodia elata | 8.070 | |
| SRR5643524 | five period of Gastrodia elata | 10.520 | |
| SRR5643525 | five period of Gastrodia elata | 6.220 | |
| SRR5643528 | five period of Gastrodia elata | 3.510 | |
| SRR5643658 | five period of Gastrodia elata | 8.730 | |
| SRR5643659 | five period of Gastrodia elata | 3.180 | |
| SRR5643660 | five period of Gastrodia elata | 6.360 | |
| SRR5643661 | five period of Gastrodia elata | 4.720 | |
| SRR5643662 | five period of Gastrodia elata | 3.720 | |
| SRR5643663 | five period of Gastrodia elata | 3.530 | |
| SRR5643664 | five period of Gastrodia elata | 2.930 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.910 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.340 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 28.610 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.730 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.310 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.770 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.770 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.32 |
| Juven | Juvenile tuber | 9.59 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.44 | |
| Mother_Juven | Mother tuber of Juvenile | 11.17 |