Detail information of GWHGAAEX013827/evm.TU.scaffold_54.33
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1041 | 0 | Translation initiation factor 2C (eIF-2C) and related proteins |
| nr | gi|695078104|ref|XP_009386429.1| | 0 | PREDICTED: protein argonaute 1B isoform X2 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q7XSA2|AGO1B_ORYSJ | 0 | Protein argonaute 1B |
| trEMBL | tr|M0SEG4|M0SEG4_MUSAM | 0 | Protein argonaute {ECO:0000256|RuleBase:RU361178} |
| TAIR | AT1G48410 | 0 | Stabilizer of iron transporter SufD / Polynucleotidyl transferase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 1153028 | 1162899 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013827
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16486.4 | ArgoN | 261 | 395 | 3.60E-34 |
| PF08699.9 | ArgoL1 | 405 | 455 | 1.80E-22 |
| PF02170.21 | PAZ | 475 | 589 | 8.80E-29 |
| PF16488.4 | ArgoL2 | 600 | 646 | 2.30E-13 |
| PF16487.4 | ArgoMid | 657 | 731 | 1.80E-09 |
| PF02171.16 | Piwi | 751 | 1070 | 1.20E-111 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11593 | ELF2C, AGO | Axon regeneration | map04361 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 98.690 |
| SRR2545915 | Juvenile tuber | 87.590 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 80.570 |
| SRR5643514 | five period of Gastrodia elata | 73.100 | |
| SRR5643515 | five period of Gastrodia elata | 71.350 | |
| SRR5643524 | five period of Gastrodia elata | 77.130 | |
| SRR5643525 | five period of Gastrodia elata | 124.090 | |
| SRR5643528 | five period of Gastrodia elata | 108.880 | |
| SRR5643658 | five period of Gastrodia elata | 122.170 | |
| SRR5643659 | five period of Gastrodia elata | 74.410 | |
| SRR5643660 | five period of Gastrodia elata | 70.560 | |
| SRR5643661 | five period of Gastrodia elata | 70.980 | |
| SRR5643662 | five period of Gastrodia elata | 64.710 | |
| SRR5643663 | five period of Gastrodia elata | 77.440 | |
| SRR5643664 | five period of Gastrodia elata | 81.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 129.100 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 95.260 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 104.730 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 175.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 156.880 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 185.610 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 140.850 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 147.510 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 80.440 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 89.450 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 73.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 73.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 85.73 |
| Juven | Juvenile tuber | 151.99 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 96.35 | |
| Mother_Juven | Mother tuber of Juvenile | 125.20 |