Detail information of GWHGAAEX013829/evm.TU.scaffold_54.35
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|310823284|ref|YP_003955642.1| | 5.00E-75 | snf2/helicase domain-containing protein [Stigmatella aurantiaca DW4/3-1] |
| KOG | KOG0387 | 0 | Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) |
| nr | gi|743813146|ref|XP_010929630.1| | 0 | PREDICTED: protein CHROMATIN REMODELING 8 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9ZV43|CHR8_ARATH | 0 | Protein CHROMATIN REMODELING 8 {ECO:0000303|PubMed:16547115} |
| trEMBL | tr|C5XF35|C5XF35_SORBI | 0 | Putative uncharacterized protein Sb03g009030 {ECO:0000313|EMBL:EES02658.1} |
| TAIR | AT2G18760 | 0 | chromatin remodeling 8 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 1176704 | 1190547 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013829
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00176.22 | SNF2_N | 400 | 710 | 2.30E-59 |
| PF00271.30 | Helicase_C | 734 | 842 | 1.10E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SNF2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10841 | ERCC6, CSB, RAD26 | Nucleotide excision repair | map03420 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.500 |
| SRR2545915 | Juvenile tuber | 20.890 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.340 |
| SRR5643514 | five period of Gastrodia elata | 25.840 | |
| SRR5643515 | five period of Gastrodia elata | 26.350 | |
| SRR5643524 | five period of Gastrodia elata | 26.600 | |
| SRR5643525 | five period of Gastrodia elata | 25.610 | |
| SRR5643528 | five period of Gastrodia elata | 25.340 | |
| SRR5643658 | five period of Gastrodia elata | 25.130 | |
| SRR5643659 | five period of Gastrodia elata | 23.850 | |
| SRR5643660 | five period of Gastrodia elata | 23.200 | |
| SRR5643661 | five period of Gastrodia elata | 26.000 | |
| SRR5643662 | five period of Gastrodia elata | 25.110 | |
| SRR5643663 | five period of Gastrodia elata | 25.570 | |
| SRR5643664 | five period of Gastrodia elata | 25.450 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 24.680 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.390 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.610 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 24.230 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 23.060 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 23.060 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 32.94 |
| Juven | Juvenile tuber | 32.39 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 44.56 | |
| Mother_Juven | Mother tuber of Juvenile | 38.79 |