Gene detail

Detail information of GWHGAAEX013834/evm.TU.scaffold_54.41

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|312136771\|ref\|YP_004004108.1\|	2.00E-07	glycoside hydrolase [Methanothermus fervidus DSM 2088]
KOG	KOG1959	0	Glycosyl hydrolase, family 38 - alpha-mannosidase
nr	gi\|672134764\|ref\|XP_008791035.1\|	0	PREDICTED: lysosomal alpha-mannosidase [Phoenix dactylifera]
Swissprot	tr\|C0HJB3\|MANA_CANEN	0	Alpha-mannosidase, light subunit {ECO:0000303\|PubMed:24221485}
trEMBL	tr\|M0TWG0\|M0TWG0_MUSAM	0	Alpha-mannosidase {ECO:0000256\|RuleBase:RU361199}
TAIR	AT3G26720	0	Glycosyl hydrolase family 38 protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	1382001	1438620	-

Transcript Sequence
>GWHTAAEX013834 ATTCAGTGCTCATTCTGTTGAAATACACGGTCTGCTCAGAAGCACTTAAGCTGTCAGCTCCATTGTGATCACTGCTCGCTGCCGTCGAATGCAGCTGCTTTGGGACATCTCCTTTTACGCTGGAATCAATGGCCGATCGCCGTCTTTTTTCTCTCCTCCTCGTTGCTCTCTCAGTTTCGATCTTCACCTTCACTGAAGTCTCAGGGTACATCGCCTACAACACCACTCCCACGATCGTCCCAAGTAAGATCAATGTCCACCTCGTCCCTCACAGTCACGATGACGTCGGCTGGCTGAAAACCGTCGATCAGTACTACGTAGGATCTAATAACAGCATTCAGGGAGCCTGCGTTCAGAACGTTTTGGATTCAGTTGTTTCTGCTCTTGTAGCAGACAAGAACAGGAGATTTATCTTTGTCGAGCAGGCGTTCTTTCAGCGCTGGTGGAGACAGCAGAGCGATGCGACTAAGAGGATTGTGAAGAAGCTTGTTGGATCGGGTCAATTGGAGTTCATAAATGGGGGCATGTGCATGCATGATGAGGCGGCTCCGCATTATATTGACATGATTGATCAGACAACTATGGGCCATTTCTTCATTAAGAAGGAGTTTAATCAGATACCGAGGATTGGATGGCAGATTGATCCTTTTGGTCATTCAGCTGTTCAGGCTTACTTGCTCTCAGCTGAGGTAGGGTTTGATGCTCTTTATTTTTCTCGAATTGATTACCAAGACAGAACGAGACGGAAACAATTGAAAAATCTTGAGGTTGTGTGGAGGGGATCAAAGACACTGGGCTCATCAGCAGATATTTACACTGGCATTTTCCCGGAGAACTATGAGCCTCCTCCTGGAGGATTTTATTTTGAGGTCAATGATAAGGATCCTGTCATTCAGGATGATCCGCTATTGTTTGATTTCAACGTCCATGATCGAGTTAATGATTTTGTTGCTGCAGCTATATCACAGGCAAACATTACTAAAACAAACCACATCATGTTCACCATGGGAACTGATTTTAAGTATCAATATGCAAATTCATGGTTCAGACAGATGGACAAGTTTATTCATTATGTTAACCAGGATGGCCGAGTTAATGTCTTGTACTCAACACCTTCCATATACACTGATGCTAAATATGCAGCAAATGAAACGTGGACTCTCAAAACAGATGACTTCTTCCCATATGCTGATGGTCCAAATAGATATTGGACTGGATATTTCTCCAGCAGGCCTGCTTTCAAACGGTATGTCAGAATGATGAGTGGCTACAATCTGGCTGCAAAGCAACTAGAATTTCTGAGAGGACGGGACAACTCAGGGTTCACTACTGACAGATTGTCTGATGCTTTAGCAATTGCTCAGCATCATGATGCAGTTAGTGGAACTGAACAACAGCATGTGGCAAATGATTATGCTAAACGACTTTATATAGGCTATTCTGAGGCTGAGAAGCTTGTTGAGCTATCACTTAGCTGCTTGACAGAGTCATTCTTCAATACAGGTTGTAATAGTCCAAACACAAAGTTTGAACAGTGTCCTCTCTTGAATTTAAGCTACTGTCCTCCATCAGAAGCAAAAGTCTCAAATGGAAAAAGCCTGGTTGTTCTTGTGTACAACTCGCTTGGTTGGAAAAGGGATGATGTAATCCTAATACCTGTTGTCAGCAATTCCGTCACAGTCATGGATTCTTCCAATGGATTAGAAATTGAGTCTCAGCTTCTGCCTATTATTGACTCTTCTATAAGCATACGAAGCCAATATGTCAAGGCATATCTTGGTGAATCCCTTGATATTGCTCCCAAATTTTGGCTTGCTTTCCAAGTGTCCGTACCACCACTTGGTTTCAGCACATATATCATCTCCAGTGCTACAAATAAAGGCTCTGTTGCTTCTATGTCATCTGTGCACACTTTGGAAAGAAGCAGTACTGGCGATGTAGAGATTGGACCTGGAGAATTGAAGCTTCAGTTTAATGCCAATGAACGTGAACTCTCTTATTATACCAACAATAGAAGAGCTGTTAATTTGCCGTTGAAACAATCATTTAAGTTCTATACTGGATCTGCTGGAGATTATACTGATCCCCAGGCCTCCGGAGCTTATGTTTTTCGCCCAGCTGGTACCTTCCCAATCAAATTTGAAGAGGTGCCATTTCGAATTCTTCAAGGTCCCATATTGGATGAAGTTCATCAACAGGTCAACCCATGGATCTATCAGATAACTAGAGTGTACAAGGCCAAAGAGCATGCCGAATTTGAGTTCATAGTTGGACCCATTCCCATTGCTGATGGAACTGGGAAAGAATTAGCAACTCAGTTTACTACGCCAATTATGACCAACAAGACGTTTTACACTGATTCTAATGGACGTGATTTTATAAAGAGGATTCGAGATTATAGGGAAGACTGGGCACTGCAAGTAAATCAACCTGTTGCTGGAAATTACTATCCTATTAACCTTGGAACTTACATAAAAGATAGTGACACAGAGTTATCTCTTCTGGTTGACCGATGTATGGGTGGCTCAAGCATTCGAGATGGACAAATAGAGCTGATGCTTCATAGACGATTGCTTCATGATGATGGTAAAGGTGTTGGAGAAGCACTCAATGAAGAAATTTGTGTGAACAATAAATGTGACGGACTAACGGTCCAGGGAAAGTTTTATCTTAGAATCGATTCGTCGGGAGAAGGAGCCAAATGGCGCAGAACTGTAGGACAGGAGATATATTCTCCTCTTCTGATCGCATTTTCCGAGCAGCATGGAGGCAAGGAATGGGCTAATTCGCATATCTCGACATTCACTGCAATGCAATCTTCTTACAGTCTGCCAGAAAACGTAGCTCTGATTACCCTCCAGGCGCTTGGGGATGGAACGGTTCTCCTTCGATTGGCGCACCTCTACGAGATGGGCGAGGATAAAGACCTCTCTAAGATGGCCACAGTGGACCTCAAGAAGATGTTTCCTGGAAAGAAGATAGTGAAGATCACGGAGACGAACCTCTCCGGGAACGAGGAGAGGTCGGCGATGGAGAAGAGGAGGCTGAAATGGAGAGTGGCGGGGGCTTCAAATTCGGAGAAAGCGACGAGGGGAGCGGCGGTGGCTTTCGGCCGTAATTCCGATCATCTTCTGGTTGAGCTTGGCCCTATGGAGATCCGGACATTCCTCCTCGACTTTGATAGCAGCGGCTGGGAATCGTGATCGTCACAATTCAGTCAGCGCTGGTGAGTCTCTGCTTGAAATATCTATCTGCTGTCAAATGTTATATCATCAATAAAATGTCATAGGAATGTCTATCGGCTTCTCTGCCTCCCTATGTCGTAGGAATATTGTGCTTGAATGAAAGAGGCATTTAGCTCCATATAAAGCATGCCGTTCAATGATGCTTTTTTTTTTTAAAGAATTTAAGCTTATATGTGGGCGATGGGATTTGATCTGATCTATCGAGAATGCAAATTCGATCGCTGCGATATATATATTCACCTAATTATTATCATAAATCCTTTTTTTAAAAAGTGTACATATATTGTGCTTTTATATGAACTCTTACTCAAGAGCTCTAAAGAGAGAGAGTGACTATTGCTAATTGTAGAAGGGGGGATTTTGATTACATGACAAATTGAACCCATCTCGAGAAAGTGTAATTTTCTTTGAACTTGGGAACTTTTCATATGCTCAAAAATTTTCTTACTTGGAG

Network for GWHGAAEX013834

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01074.21	Glyco_hydro_38	42	354	6.60E-91
PF09261.10	Alpha-mann_mid	360	433	3.00E-17
PF07748.12	Glyco_hydro_38C	492	1014	2.10E-91

Protein Sequence

>GWHPAAEX013834
MADRRLFSLLLVALSVSIFTFTEVSGYIAYNTTPTIVPSKINVHLVPHSHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVVSALVADKNRRFIFVEQAFFQRWWRQQSDATKRIVKKLVGSGQLEFINGGMCMHDEAAPHYIDMIDQTTMGHFFIKKEFNQIPRIGWQIDPFGHSAVQAYLLSAEVGFDALYFSRIDYQDRTRRKQLKNLEVVWRGSKTLGSSADIYTGIFPENYEPPPGGFYFEVNDKDPVIQDDPLLFDFNVHDRVNDFVAAAISQANITKTNHIMFTMGTDFKYQYANSWFRQMDKFIHYVNQDGRVNVLYSTPSIYTDAKYAANETWTLKTDDFFPYADGPNRYWTGYFSSRPAFKRYVRMMSGYNLAAKQLEFLRGRDNSGFTTDRLSDALAIAQHHDAVSGTEQQHVANDYAKRLYIGYSEAEKLVELSLSCLTESFFNTGCNSPNTKFEQCPLLNLSYCPPSEAKVSNGKSLVVLVYNSLGWKRDDVILIPVVSNSVTVMDSSNGLEIESQLLPIIDSSISIRSQYVKAYLGESLDIAPKFWLAFQVSVPPLGFSTYIISSATNKGSVASMSSVHTLERSSTGDVEIGPGELKLQFNANERELSYYTNNRRAVNLPLKQSFKFYTGSAGDYTDPQASGAYVFRPAGTFPIKFEEVPFRILQGPILDEVHQQVNPWIYQITRVYKAKEHAEFEFIVGPIPIADGTGKELATQFTTPIMTNKTFYTDSNGRDFIKRIRDYREDWALQVNQPVAGNYYPINLGTYIKDSDTELSLLVDRCMGGSSIRDGQIELMLHRRLLHDDGKGVGEALNEEICVNNKCDGLTVQGKFYLRIDSSGEGAKWRRTVGQEIYSPLLIAFSEQHGGKEWANSHISTFTAMQSSYSLPENVALITLQALGDGTVLLRLAHLYEMGEDKDLSKMATVDLKKMFPGKKIVKITETNLSGNEERSAMEKRRLKWRVAGASNSEKATRGAAVAFGRNSDHLLVELGPMEIRTFLLDFDSSGWES

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH38

KEGG pathway

KO	Enzyme	pathway	mapID
K01191	MAN2C1	Other glycan degradation	map00511

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0006013	Biological Process	mannose metabolic process
GO:0004559	Molecular Function	alpha-mannosidase activity
GO:0003824	Molecular Function	catalytic activity
GO:0030246	Molecular Function	carbohydrate binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	252.310
SRP064423	SRR2545915	Juvenile tuber	603.290
SRP108465	SRR5643513	five period of Gastrodia elata	260.790
	SRR5643514	five period of Gastrodia elata	201.150
	SRR5643515	five period of Gastrodia elata	243.070
	SRR5643524	five period of Gastrodia elata	213.420
	SRR5643525	five period of Gastrodia elata	97.170
	SRR5643528	five period of Gastrodia elata	81.110
	SRR5643658	five period of Gastrodia elata	115.930
	SRR5643659	five period of Gastrodia elata	190.350
	SRR5643660	five period of Gastrodia elata	134.930
	SRR5643661	five period of Gastrodia elata	116.930
	SRR5643662	five period of Gastrodia elata	73.070
	SRR5643663	five period of Gastrodia elata	117.490
	SRR5643664	five period of Gastrodia elata	83.980
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	247.680
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	152.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	169.370
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	213.930
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	155.890
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	165.300
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	156.270
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	163.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	112.170
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	99.360
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	181.760
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	181.760
SRP279888	Gastro	Gastrodia elata tuber	86.31
	Juven	Juvenile tuber	119.35
	Mother_Gastro	Mother tuber of Gastrodia elata	48.15
	Mother_Juven	Mother tuber of Juvenile	90.08