Detail information of GWHGAAEX013839/evm.TU.scaffold_54.44
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|15806543|ref|NP_295256.1| | 7.00E-32 | hypothetical protein DR_1533 [Deinococcus radiodurans R1] |
| nr | gi|695055367|ref|XP_009415859.1| | 0 | PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8VYZ0|ORTH2_ARATH | 0 | E3 ubiquitin-protein ligase ORTHRUS 2 |
| trEMBL | tr|M0UB32|M0UB32_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP21240_001} |
| TAIR | AT1G57820 | 0 | Zinc finger (C3HC4-type RING finger) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 1489704 | 1510663 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013839
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00097.24 | zf-C3HC4 | 142 | 180 | 2.60E-07 |
| PF02182.16 | SAD_SRA | 274 | 421 | 1.00E-46 |
| PF13445.5 | zf-RING_UBOX | 513 | 545 | 1.80E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.770 |
| SRR2545915 | Juvenile tuber | 6.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.710 |
| SRR5643514 | five period of Gastrodia elata | 5.010 | |
| SRR5643515 | five period of Gastrodia elata | 4.180 | |
| SRR5643524 | five period of Gastrodia elata | 3.540 | |
| SRR5643525 | five period of Gastrodia elata | 3.140 | |
| SRR5643528 | five period of Gastrodia elata | 3.750 | |
| SRR5643658 | five period of Gastrodia elata | 4.060 | |
| SRR5643659 | five period of Gastrodia elata | 6.420 | |
| SRR5643660 | five period of Gastrodia elata | 7.270 | |
| SRR5643661 | five period of Gastrodia elata | 6.950 | |
| SRR5643662 | five period of Gastrodia elata | 5.640 | |
| SRR5643663 | five period of Gastrodia elata | 5.160 | |
| SRR5643664 | five period of Gastrodia elata | 7.380 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.410 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.720 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.560 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.250 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.210 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.990 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.990 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.77 |
| Juven | Juvenile tuber | 8.39 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.65 | |
| Mother_Juven | Mother tuber of Juvenile | 6.91 |