Detail information of GWHGAAEX013840/evm.TU.scaffold_54.45


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|389874390|ref|YP_006373746.1|2.00E-61ubiquinol-cytochrome c reductase, iron-sulfur subunit [Tistrella mobilis KA081020-065]
KOGKOG16712.00E-139Ubiquinol cytochrome c reductase, subunit RIP1
nrgi|672197047|ref|XP_008776970.1|3.12E-156PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Phoenix dactylifera]
Swissprottr|P49727|UCRI_MAIZE7.00E-149Cytochrome b-c1 complex subunit Rieske, mitochondrial (Precursor)
trEMBLtr|M0T0I1|M0T0I1_MUSAM4.00E-148Cytochrome b-c1 complex subunit Rieske, mitochondrial {ECO:0000256|RuleBase:RU004494}
TAIRAT5G134302.00E-139Ubiquinol-cytochrome C reductase iron-sulfur subunit

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005915552491565751+
Transcript Sequence

Network for GWHGAAEX013840

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02921.13UCR_TM961451.70E-11
PF00355.25Rieske1572593.80E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00411UQCRFS1, RIP1, petA Metabolic pathways map01100
Oxidative phosphorylationmap00190
Two-component systemmap02020
Cardiac muscle contractionmap04260
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0051537Molecular Function2 iron, 2 sulfur cluster binding
GO:0008121Molecular Functionubiquinol-cytochrome-c reductase activity
GO:0016491Molecular Functionoxidoreductase activity
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms55.490
SRR2545915Juvenile tuber71.220
SRP108465SRR5643513five period of Gastrodia elata154.220
SRR5643514five period of Gastrodia elata254.180
SRR5643515five period of Gastrodia elata189.980
SRR5643524five period of Gastrodia elata249.060
SRR5643525five period of Gastrodia elata295.820
SRR5643528five period of Gastrodia elata293.000
SRR5643658five period of Gastrodia elata217.290
SRR5643659five period of Gastrodia elata121.390
SRR5643660five period of Gastrodia elata125.440
SRR5643661five period of Gastrodia elata126.460
SRR5643662five period of Gastrodia elata103.860
SRR5643663five period of Gastrodia elata104.950
SRR5643664five period of Gastrodia elata87.830
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1140.880
SRR6049655Rhizomagastrodiae_C368-T10_good_1213.000
SRR6049656Rhizomagastrodiae_C368-T07_good_1172.490
SRR6049657Rhizomagastrodiae_C368-T07_good_1103.900
SRR6049658Rhizomagastrodiae_C368-T04_good_1110.330
SRR6049659Rhizomagastrodiae_C368-T04_good_197.890
SRR6049660Rhizomagastrodiae_C368-T01_good_1115.170
SRR6049661Rhizomagastrodiae_C368-T04_good_1112.300
SRR6049662Rhizomagastrodiae_C368-T01_good_1247.490
SRR6049663Rhizomagastrodiae_C368-T01_good_1174.030
SRR6049664Rhizomagastrodiae_C368-T10_good_1279.360
SRR6049665Rhizomagastrodiae_C368-T10_good_1279.360
SRP279888GastroGastrodia elata tuber 87.62
JuvenJuvenile tuber116.80
Mother_GastroMother tuber of Gastrodia elata 106.25
Mother_JuvenMother tuber of Juvenile 92.43