Detail information of GWHGAAEX013847/evm.TU.scaffold_54.52
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|113476675|ref|YP_722736.1| | 1.00E-90 | NADH:flavin oxidoreductase [Trichodesmium erythraeum IMS101] |
| KOG | KOG0134 | 3.00E-145 | NADH:flavin oxidoreductase/12-oxophytodienoate reductase |
| nr | gi|672117581|ref|XP_008781981.1| | 5.68E-159 | PREDICTED: putative 12-oxophytodienoate reductase 4 [Phoenix dactylifera] |
| Swissprot | tr|Q8GYB8|OPR2_ARATH | 8.00E-146 | 12-oxophytodienoate reductase 2 |
| trEMBL | tr|M0S9S1|M0S9S1_MUSAM | 9.00E-159 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P20800_001} |
| TAIR | AT1G76690 | 3.00E-145 | 12-oxophytodienoate reductase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 1617137 | 1619195 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013847
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00724.19 | Oxidored_FMN | 2 | 270 | 1.20E-65 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05894 | OPR | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| alpha-Linolenic acid metabolism | map00592 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0010181 | Molecular Function | FMN binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.060 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.810 |
| SRR5643514 | five period of Gastrodia elata | 0.540 | |
| SRR5643515 | five period of Gastrodia elata | 1.010 | |
| SRR5643524 | five period of Gastrodia elata | 0.350 | |
| SRR5643525 | five period of Gastrodia elata | 0.060 | |
| SRR5643528 | five period of Gastrodia elata | 0.060 | |
| SRR5643658 | five period of Gastrodia elata | 0.050 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.540 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 32.710 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.840 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 19.500 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.780 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.150 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.220 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.320 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 31.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.00 | |
| Mother_Juven | Mother tuber of Juvenile | 5.44 |