Detail information of GWHGAAEX013852/evm.TU.scaffold_54.57
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1010 | 0 | Rb (Retinoblastoma tumor suppressor)-related protein |
| nr | gi|672180844|ref|XP_008810623.1| | 0 | PREDICTED: retinoblastoma-related protein [Phoenix dactylifera] |
| Swissprot | tr|Q8H252|RBR_COCNU | 0 | Retinoblastoma-related protein |
| trEMBL | tr|M0TLE9|M0TLE9_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P00470_001} |
| TAIR | AT3G12280 | 0 | retinoblastoma-related 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 1703985 | 1714226 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013852
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF11934.7 | DUF3452 | 98 | 235 | 3.90E-24 |
| PF01858.16 | RB_A | 418 | 618 | 2.10E-63 |
| PF01857.19 | RB_B | 741 | 867 | 3.20E-39 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | RB |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04681 | RBL1 | TGF-beta signaling pathway | map04350 |
| Cell cycle | map04110 | ||
| Cellular senescence | map04218 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0051726 | Biological Process | regulation of cell cycle |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 37.110 |
| SRR2545915 | Juvenile tuber | 34.930 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.410 |
| SRR5643514 | five period of Gastrodia elata | 23.310 | |
| SRR5643515 | five period of Gastrodia elata | 22.850 | |
| SRR5643524 | five period of Gastrodia elata | 23.020 | |
| SRR5643525 | five period of Gastrodia elata | 30.490 | |
| SRR5643528 | five period of Gastrodia elata | 26.710 | |
| SRR5643658 | five period of Gastrodia elata | 35.350 | |
| SRR5643659 | five period of Gastrodia elata | 27.080 | |
| SRR5643660 | five period of Gastrodia elata | 26.710 | |
| SRR5643661 | five period of Gastrodia elata | 25.030 | |
| SRR5643662 | five period of Gastrodia elata | 25.980 | |
| SRR5643663 | five period of Gastrodia elata | 28.380 | |
| SRR5643664 | five period of Gastrodia elata | 25.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 20.390 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 24.380 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 20.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 23.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.750 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.520 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.200 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.060 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 25.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 25.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 30.34 |
| Juven | Juvenile tuber | 23.47 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.12 | |
| Mother_Juven | Mother tuber of Juvenile | 15.03 |