Detail information of GWHGAAEX013861/evm.TU.scaffold_54.65
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4826 | 1.00E-79 | C-8,7 sterol isomerase |
| nr | gi|695032068|ref|XP_009403567.1| | 6.46E-109 | PREDICTED: probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FTZ2|EBP_ORYSJ | 2.00E-103 | Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase |
| trEMBL | tr|M0T4L5|M0T4L5_MUSAM | 2.00E-109 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P06170_001} |
| TAIR | AT1G20050 | 1.00E-79 | C-8,7 sterol isomerase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000059 | 1875069 | 1900209 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013861
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05241.11 | EBP | 33 | 207 | 3.90E-55 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01824 | EBP | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Steroid biosynthesis | map00100 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016125 | Biological Process | sterol metabolic process |
| GO:0047750 | Molecular Function | cholestenol delta-isomerase activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 32.960 |
| SRR2545915 | Juvenile tuber | 47.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 57.910 |
| SRR5643514 | five period of Gastrodia elata | 59.750 | |
| SRR5643515 | five period of Gastrodia elata | 61.560 | |
| SRR5643524 | five period of Gastrodia elata | 54.140 | |
| SRR5643525 | five period of Gastrodia elata | 47.660 | |
| SRR5643528 | five period of Gastrodia elata | 59.170 | |
| SRR5643658 | five period of Gastrodia elata | 66.100 | |
| SRR5643659 | five period of Gastrodia elata | 50.390 | |
| SRR5643660 | five period of Gastrodia elata | 42.460 | |
| SRR5643661 | five period of Gastrodia elata | 47.890 | |
| SRR5643662 | five period of Gastrodia elata | 45.820 | |
| SRR5643663 | five period of Gastrodia elata | 49.740 | |
| SRR5643664 | five period of Gastrodia elata | 31.370 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 78.220 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 80.610 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 79.710 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 57.490 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 60.610 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 53.600 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 56.560 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 52.120 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 79.980 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 76.530 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 118.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 118.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 41.27 |
| Juven | Juvenile tuber | 31.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 44.54 | |
| Mother_Juven | Mother tuber of Juvenile | 31.74 |