Gene detail

Detail information of GWHGAAEX013862/evm.TU.scaffold_54.66

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|433603750\|ref\|YP_007036119.1\|	9.00E-09	hypothetical protein BN6_19260 [Saccharothrix espanaensis DSM 44229]
KOG	KOG0290	0	Conserved WD40 repeat-containing protein AN11
nr	gi\|693302232\|gb\|AIS35935.1\|	0	WD40 repeat protein [Phalaenopsis equestris]
Swissprot	tr\|Q9LPV9\|LWD1_ARATH	0	WD repeat-containing protein LWD1
trEMBL	tr\|A0A096ZX80\|A0A096ZX80_PHAEQ	0	WD40 repeat protein {ECO:0000313\|EMBL:AIS35935.1}
TAIR	AT1G12910	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	1901639	1903115	+

Transcript Sequence
>GWHTAAEX013862 ATATTTAAAATATTAATGATACAGATGAAGTATTTAAGAAACTTATGTTAATTTATAAATAAAAAAGATATTTTGTGGTATATATGTAAAACCCAATAAATAAATAATTTGGATTTTGTCAAATTACTCGTGCTTTTACCAACAGGCTTTCTGAAACAGTAATCAGTCGCTCAGCTAGGGCTCCGCCGTCTCCCCTCATTTCGTCTTCTTCGATGGTCTCTTCCCGATCAGCGCGTCTTCTCCATTTCCTTCAACGGAATGATTGTTCTCCACTGACAGGCTAACAAAAGAAGGGCGCACAAGCAGAGGTCCTCAAAGTTAATTCTCAGCGGGGCAGAAGAATGGCTGTGAGCGGCGTCGGCGGCGGGGGAACGCCGGACGAACCCGAGGATCAGCAAAAGCGCTCTGAGATCTACACCTACGAGGCGCCATGGCACGTCTACGCCATGAACTGGAGCGTTCGTCGGGACAAGAAGTACCGGCTTGCGATCGCGAGCCTTCTCGAGCAGTACACGAATCGGGTGGAGATCGTTCAGCTGGACGATTCAACGGGGGAGATCCGCTCGGATCCCAACCTCAGCTTCGATCACCCTTACCCTCCCACCAAGGCCATGTTCATCCCCGACCGCGATTGCCTCCGCCCCGATCTCCTTGCAACTTCGGCGGATTTCCTCCGCATCTGGCGGATCGCCGACGATTCCTCCCGCGTAGAGCTCAAATCCCTCTTGAACGGGAACAAGAACTCCGAGTTCTGCGGGCCGCTCACCTCCTTCGACTGGAACGAGACCGAGCCTCGGCGAATCGGGACGTCCTCCATTGACACCACCTGCACCATTTGGGACATCGAGCGCGAGGCGGTTGATACGCAGCTCATCGCTCACGACAAGGAGGTCTACGACATTGCGTGGGGCGGCGTCGGGGTTTTCGCTTCCGTCTCCGCGGATGGTTCAGTTCGCGTCTTTGATCTCCGCGATAAGGAGCATTCCACCATCATCTATGAGTCCTCAGATCCTCCCGACACCCCGCTCGTTCGCCTGGGCTGGAACAAGCAGGATCCTCGCCTCATGGCTACCATCATCATGGACAGCGCCAAGGTCGTCGTTCTTGACATCCGCTTTCCCACGCTTCCTGTGGTGGAGCTGCAGCGTCACCAGGCTAACGTCAATGCGATCGCATGGGCGCCGCACAGCTCCTGCCATATCTGCACTGCTGGGGATGATTCTCAGGCTCTCATTTGGGACCTCTCTTCTATGGGCAGTGCGTCTGCCTCCCCTGGGGGAAAGCAGCAGCAGCAGCAGCAGTCTGAGGGGGGGCTTGATCCCATCCTTGCTTACACTGCTGGAGCTGAGATCGAGCAGCTGCAGTGGTCCTCCTCGCAGCCAGATTGGGTCGCCATTGCCTTCTCCACCAAGCTGCAGATACTCAGGGTTTGATGCTTTTCACTCTTAGATCCTGTTTTATCTCCATTAATTCTTCC

Network for GWHGAAEX013862

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	177	208	0.14
PF00400.31	WD40	267	300	0.041

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.960
SRP064423	SRR2545915	Juvenile tuber	11.130
SRP108465	SRR5643513	five period of Gastrodia elata	32.820
	SRR5643514	five period of Gastrodia elata	29.270
	SRR5643515	five period of Gastrodia elata	42.300
	SRR5643524	five period of Gastrodia elata	27.900
	SRR5643525	five period of Gastrodia elata	45.020
	SRR5643528	five period of Gastrodia elata	55.940
	SRR5643658	five period of Gastrodia elata	45.720
	SRR5643659	five period of Gastrodia elata	31.400
	SRR5643660	five period of Gastrodia elata	24.900
	SRR5643661	five period of Gastrodia elata	31.380
	SRR5643662	five period of Gastrodia elata	38.850
	SRR5643663	five period of Gastrodia elata	27.810
	SRR5643664	five period of Gastrodia elata	35.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	40.820
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	50.850
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	43.840
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	37.090
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	39.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.790
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	47.090
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	42.160
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	56.120
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	51.270
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	46.850
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	46.850
SRP279888	Gastro	Gastrodia elata tuber	23.19
	Juven	Juvenile tuber	16.90
	Mother_Gastro	Mother tuber of Gastrodia elata	35.09
	Mother_Juven	Mother tuber of Juvenile	22.99