Detail information of GWHGAAEX013866/evm.TU.scaffold_54.70


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|320159746|ref|YP_004172970.1|6.00E-77prephenate dehydratase [Anaerolinea thermophila UNI-1]
KOGKOG27970Prephenate dehydratase
nrgi|697142602|ref|XP_009625407.1|0PREDICTED: arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like [Nicotiana tomentosiformis]
Swissprottr|Q9SGD6|AROD6_ARATH0Arogenate dehydratase/prephenate dehydratase 6, chloroplastic (Precursor)
trEMBLtr|A5BWG3|A5BWG3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN68383.1}
TAIRAT1G082500arogenate dehydratase 6

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005919547931956762+
Transcript Sequence

Network for GWHGAAEX013866

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00800.17PDT1223002.40E-57
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05359ADT, PDT Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Biosynthesis of amino acidsmap01230
Tryptophan metabolismmap00380

Gene Ontology

GO term OntologyName
GO:0009094Biological ProcessL-phenylalanine biosynthetic process
GO:0004664Molecular Functionprephenate dehydratase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms38.340
SRR2545915Juvenile tuber33.830
SRP108465SRR5643513five period of Gastrodia elata122.640
SRR5643514five period of Gastrodia elata32.470
SRR5643515five period of Gastrodia elata246.670
SRR5643524five period of Gastrodia elata50.440
SRR5643525five period of Gastrodia elata132.350
SRR5643528five period of Gastrodia elata544.580
SRR5643658five period of Gastrodia elata127.290
SRR5643659five period of Gastrodia elata241.350
SRR5643660five period of Gastrodia elata114.170
SRR5643661five period of Gastrodia elata207.870
SRR5643662five period of Gastrodia elata317.900
SRR5643663five period of Gastrodia elata200.030
SRR5643664five period of Gastrodia elata449.410
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_141.720
SRR6049655Rhizomagastrodiae_C368-T10_good_172.350
SRR6049656Rhizomagastrodiae_C368-T07_good_136.750
SRR6049657Rhizomagastrodiae_C368-T07_good_126.680
SRR6049658Rhizomagastrodiae_C368-T04_good_132.060
SRR6049659Rhizomagastrodiae_C368-T04_good_126.020
SRR6049660Rhizomagastrodiae_C368-T01_good_162.060
SRR6049661Rhizomagastrodiae_C368-T04_good_148.370
SRR6049662Rhizomagastrodiae_C368-T01_good_187.350
SRR6049663Rhizomagastrodiae_C368-T01_good_176.840
SRR6049664Rhizomagastrodiae_C368-T10_good_153.900
SRR6049665Rhizomagastrodiae_C368-T10_good_153.900
SRP279888GastroGastrodia elata tuber 57.83
JuvenJuvenile tuber10.76
Mother_GastroMother tuber of Gastrodia elata 220.45
Mother_JuvenMother tuber of Juvenile 52.48