Detail information of GWHGAAEX013870/evm.TU.scaffold_54.74


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|427722229|ref|YP_007069506.1|1.00E-12DEAD/DEAH box helicase [Leptolyngbya sp. PCC 7376]
KOGKOG03395.00E-91ATP-dependent RNA helicase
nrgi|672168742|ref|XP_008804384.1|2.28E-170PREDICTED: ATP-dependent RNA helicase DBP2 [Phoenix dactylifera]
Swissprottr|Q9C551|RH5_ARATH3.00E-14DEAD-box ATP-dependent RNA helicase 5
trEMBLtr|A0A096SK00|A0A096SK00_MAIZE7.00E-129Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G152561_P02}
TAIRAT2G286005.00E-91P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005920271702048998-
Transcript Sequence

Network for GWHGAAEX013870

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.28DEAD2083251.80E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005524Molecular FunctionATP binding
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.810
SRR2545915Juvenile tuber20.560
SRP108465SRR5643513five period of Gastrodia elata18.350
SRR5643514five period of Gastrodia elata21.930
SRR5643515five period of Gastrodia elata18.010
SRR5643524five period of Gastrodia elata21.000
SRR5643525five period of Gastrodia elata10.930
SRR5643528five period of Gastrodia elata8.370
SRR5643658five period of Gastrodia elata7.800
SRR5643659five period of Gastrodia elata20.410
SRR5643660five period of Gastrodia elata22.090
SRR5643661five period of Gastrodia elata24.420
SRR5643662five period of Gastrodia elata26.780
SRR5643663five period of Gastrodia elata22.240
SRR5643664five period of Gastrodia elata28.970
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.550
SRR6049655Rhizomagastrodiae_C368-T10_good_119.750
SRR6049656Rhizomagastrodiae_C368-T07_good_123.370
SRR6049657Rhizomagastrodiae_C368-T07_good_119.150
SRR6049658Rhizomagastrodiae_C368-T04_good_120.650
SRR6049659Rhizomagastrodiae_C368-T04_good_117.640
SRR6049660Rhizomagastrodiae_C368-T01_good_119.820
SRR6049661Rhizomagastrodiae_C368-T04_good_118.620
SRR6049662Rhizomagastrodiae_C368-T01_good_122.190
SRR6049663Rhizomagastrodiae_C368-T01_good_121.440
SRR6049664Rhizomagastrodiae_C368-T10_good_120.760
SRR6049665Rhizomagastrodiae_C368-T10_good_120.760
SRP279888GastroGastrodia elata tuber 32.81
JuvenJuvenile tuber28.89
Mother_GastroMother tuber of Gastrodia elata 13.81
Mother_JuvenMother tuber of Juvenile 14.20