Gene detail

Detail information of GWHGAAEX013873/evm.TU.scaffold_54.79

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|325110937\|ref\|YP_004272005.1\|	2.00E-36	SNF2-related protein [Planctomyces brasiliensis DSM 5305]
KOG	KOG1001	0	Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily
nr	gi\|743764020\|ref\|XP_010912212.1\|	0	PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q9FNI6\|SM3L2_ARATH	0	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2
trEMBL	tr\|A0A022R6L6\|A0A022R6L6_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU36107.1}
TAIR	AT5G22750	0	DNA/RNA helicase protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	2148210	2190485	-

Transcript Sequence
>GWHTAAEX013873 ATGATCAACAACTGCTTCATTCCGAGCCCGAAGAAGATCCCTCGTCTCTGTATAAGGTTTAAAAAGGCGGGAATCCGATATTATTTCGCTAGAAGAAGCGGGCTGGTAAAGAGCGCGGCAAGCAGCCATAGGTTTTCGTCTCACGCCTTCTTCTTACTCACCTCCTTTCCCCGACCCGACTTCTTTGCTGATTGCGGTGTCTTCTACAGCACTCGTGCTTTCTCCTCTCCAATCTTACACTGCCTAGGGTTAGGGTTTATTGCAAACCTTCCTTTGCAGCATAATCTGGCGTTGATGAGAAACAAGGCCTCGGGCGAGCAGATCGTCCTCGTCCGGTCCGTGGTGGGCGAAAGTTTTTCTGAAATGGACATTATCCGCGCTCTACATTTGTCCAACTATGACCCCTCCGGCGCAATCAACATCATATTCGACACACCGCGTCTTAGGCTTGTCGAGGAGAACGGGAGTGCCGTAAAAAAAGCTCAGAACTCTCCCGCTGCTGCCAGTCCAAAAGCTGCTGTTCCCAGTGATAAATCTGCACAGCAGCATAGCTCCTGTGCTGACTTTCTTGTAGAGCCAGGTTCGATCAATAGCTCCATTGCACAGTCTGAAGCCTCTTCGGATACCTCGGTTCCTGGCAATAGTGACTGGTGGTTTTTAGGAAGTTCAGAGCTTGCTGGAATATCTACCAGCAAGGGGAGAACGCTTAAGGTGGGTGAACCGGTAGCATTCTCTTTTCCTTCAACTAAAGGTTCGCAGTTTTCTACAAAAGTTCCTGGTCGTGGACGTGGAGTGGCTTCTTGTTCCGAGATTGTTCGTTTTTCCTCAGAAAAACAAGGCGAGATTGGCCGTATACCAAATGAATGGGCTCGCTGCCTTTCACCACTTGTTAGAGAAAAAAAGATTAAGATTGTTGGTTACTGCAAATTTGCTCCTGAGGTCCTTTGCATCATGGACACAATTCTTTTGTCAGTTAGTATTTATATAAAGAGTTCAATGTTCAGCAAGCGTCATCAAACATCATTTAAAGTAACTAATTCTGTAAACGATGAATCTACACTTCATCCACTTCCAGCCCTGTTCAAACTGCTGGGGTTAACTCCGTTTATGAAGGCTGAATTAACACCAGATAATTTTTATGGTAAAAAGCGGTCCAAGGTACAAACAAAACTTGTATTCTTCTGTTCTTCTACTGCGGAACAGATGCTGCTAACTTTTGCGTTTGTGCAGGGCAGCTCAACAGAGCTACTTCCACATGAAGCACCAGCTCCAAAAGTTAGGAAGCTACTTTCACATGAAGGTAGTACTGAAAGTAATCAAGAGATCATATCGGATTCAGATGTGGATAATATTGTGGGAATTGCAGATCGCTCAGAATTAGAGGAAATAGATCCACCTGAAACACTGCTGTGTGAATTACGGTCTTATCAAAAGCAGGCTCTTCATTGGATGCTGCAGCTAGAGAAAGGAAGGTGCTTAGAGGTGGCATCAAGAACCCTTCATCCATGTTGGGATGCATATCGCCTTGATGATAAGAGGGATCTTGTTATTTACTTGAATACTTTTTCTGGCGATGCGACTACAGAATTTCCTAGCACTCAGCAAATAGCAAGAGGAGGAATTTTGGCAGATGCAATGGGTTTAGGCAAGACCATAATGACTATAGCTCTTTTGCTTGCTCATTCTGAGAAAGAGAGCACATCTAATTTAGTTCAGGGTTGCAATGAAGAAAATAGCACCGGTGGCATCTCCAATAAGTTTTCCAATAATTTAAAAAAATCAGCAAATATCTCAGGCTTTAACAAATTGTTGAAATCAAAATCCACGCTGGCTGGTGGTGGCACTTTAATTGTTTGTCCTATGACACTTCTAGGCCAGTGGAAGGCTGAGATTGAGACACATGCGTTGCAAGGATCTCTTTCTATTTATGTTCATTATGGGCCAAGTAGACCAAAAGAAGTTAAGTTCCTTATACAAAGCAATGTTGTTCTGACTACTTATGGTATTTTAGCATCAGAATTCTCAGCTGAGAACGCTGAAGACAATGGAGGACTTTACTCAGTTCATTGGTTCAGAATTGTGCTAGATGAAGCGCATACTATAAAATCATCAAAGAGCCAAATTTCTATTGCTGCTGCAGCTCTAACTGCTGACAGGAGATGGTGCCTTACAGGGACCCCCATTCAGAACAATCTTGAAGACCTATTTAGCCTTCTTCGATTCTTAAGGGTAGAGCCTTGGGGAAATTGGGCATTGTGGAATAAGCTCATTCAAAAGCCTTATGAGGTAGGTGATGAAAGTGGATTAAAATTGGTACAAACCTTACTGAAGCCTATAATGTTAAGAAGAACTAAACAGAGCACGGACAGAGAGGGAAGGCCCATTCTTGTTCTTCCACCTGCAAATGTTGGAGTAATTTATTGTAATTTGACATCAGCAGAAAAGGACTTTTATGAGGCTTTGTTCAAAAAATCCAAGGTGAAATTTGATCAATTCGTTGAGCAAGGCAGAGTTCTTCACAATTATGCTTCCATTTTGGAGTTGCTCTTACGTCTTCGGCAGTGTTGTGATCATCCATTCCTTGTTATGAGTCGCAGCGATACAAAAGAATTTGCGGACCTTAACAAGCTAGCAAAGCGTTTCCTCAAAGGCAGCAAAAGCGCTGCCGGAGGGGAGTCTGACACTACCCTTTCAAAGGCTTATGTTATGGAAGTTGTAGAGGAATTGAGGAAAGGTGAAGAAGGGGAGTGCCCTATCTGCCTAGAAGCATTTGAGGACGCTGTGCTGACTCCATGCGCTCATCGTCTGTGCCGGGAATGCCTCCTCGCAAGCTGGCGGAGCACTGCTTCTGGCCTCTGCCCGGTTTGTAGAACCACTGTGAACAAACAAGAGCTTATAACTGCTCCCACGGAGAACCGGTTTCAGATTGATGTTGAGAAGAACTGGGTGGAATCATCAAAGGTCTCTGCCCTTCTTCAGGAGCTGGAGAAGCTATGTGCTTCTGGTTCCAAGAGCATTGTCTTTAGCCAATGGACTGCTTTTTTGGACCTCCTTCAGATCCCACTCTCTAGAAACAATATAGCGTTTGCTCGCTTGGACGGAACCTTAAATCAGCAGCAGAGAGACAGAGTGATCGCCCAGTTCACAGAGGATAAAGACATTTTGGTGCTGTTGATGTCATTGAAAGCTGGAGGCGTTGGAATCAACCTGACTGCTGCAAGCAATGCCTTTCTCTTGGATCCTTGGTGGAATCCGGCAGTTGAAGAGCAGGCTGTCATGCGTATTCATAGAATTGGTCAGACTAAGACTGTTTCAATTAAACGATTCATTGTGAAGGGAACTGTGGAGGAGAGAATGGAAGGGGTGCAGGCAAGGAAGCAAAGGATGATATCCGGAGCACTAACTGATCAGGAAGTGCGAACAGCAAGGATAGAGGAATTGAAGATGCTCTTCACTTGAAGATCATCATAGTTTAAAGTTAGCCAACAACCTTTTTTTTCTTTTATTTTTAGGATTTAGGGTTTAGGTTTAGGATTTAAATAAATTATTTTTAATTTCTGTCTGAAATAGTTATCAAACGCTCTTTCTGATGGAGAAAAAAGAATATTATAGCATTTTCTTCGTTTTGTACCTTTGGAAATATATTGAATGAAATATTGATGATCAGTATATATGTGAAGTGTACTGAAGAGGTTAATATCGTC

Network for GWHGAAEX013873

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08797.10	HIRAN	220	325	3.70E-15
PF00176.22	SNF2_N	476	862	2.20E-83
PF13920.5	zf-C3HC4_3	914	962	3.10E-10
PF00271.30	Helicase_C	987	1099	1.10E-15

Protein Sequence

>GWHPAAEX013873
MINNCFIPSPKKIPRLCIRFKKAGIRYYFARRSGLVKSAASSHRFSSHAFFLLTSFPRPDFFADCGVFYSTRAFSSPILHCLGLGFIANLPLQHNLALMRNKASGEQIVLVRSVVGESFSEMDIIRALHLSNYDPSGAINIIFDTPRLRLVEENGSAVKKAQNSPAAASPKAAVPSDKSAQQHSSCADFLVEPGSINSSIAQSEASSDTSVPGNSDWWFLGSSELAGISTSKGRTLKVGEPVAFSFPSTKGSQFSTKVPGRGRGVASCSEIVRFSSEKQGEIGRIPNEWARCLSPLVREKKIKIVGYCKFAPEVLCIMDTILLSVSIYIKSSMFSKRHQTSFKVTNSVNDESTLHPLPALFKLLGLTPFMKAELTPDNFYGKKRSKVQTKLVFFCSSTAEQMLLTFAFVQGSSTELLPHEAPAPKVRKLLSHEGSTESNQEIISDSDVDNIVGIADRSELEEIDPPETLLCELRSYQKQALHWMLQLEKGRCLEVASRTLHPCWDAYRLDDKRDLVIYLNTFSGDATTEFPSTQQIARGGILADAMGLGKTIMTIALLLAHSEKESTSNLVQGCNEENSTGGISNKFSNNLKKSANISGFNKLLKSKSTLAGGGTLIVCPMTLLGQWKAEIETHALQGSLSIYVHYGPSRPKEVKFLIQSNVVLTTYGILASEFSAENAEDNGGLYSVHWFRIVLDEAHTIKSSKSQISIAAAALTADRRWCLTGTPIQNNLEDLFSLLRFLRVEPWGNWALWNKLIQKPYEVGDESGLKLVQTLLKPIMLRRTKQSTDREGRPILVLPPANVGVIYCNLTSAEKDFYEALFKKSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRSDTKEFADLNKLAKRFLKGSKSAAGGESDTTLSKAYVMEVVEELRKGEEGECPICLEAFEDAVLTPCAHRLCRECLLASWRSTASGLCPVCRTTVNKQELITAPTENRFQIDVEKNWVESSKVSALLQELEKLCASGSKSIVFSQWTAFLDLLQIPLSRNNIAFARLDGTLNQQQRDRVIAQFTEDKDILVLLMSLKAGGVGINLTAASNAFLLDPWWNPAVEEQAVMRIHRIGQTKTVSIKRFIVKGTVEERMEGVQARKQRMISGALTDQEVRTARIEELKMLFT

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016818	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.220
SRP064423	SRR2545915	Juvenile tuber	2.340
SRP108465	SRR5643513	five period of Gastrodia elata	2.670
	SRR5643514	five period of Gastrodia elata	2.890
	SRR5643515	five period of Gastrodia elata	1.990
	SRR5643524	five period of Gastrodia elata	2.330
	SRR5643525	five period of Gastrodia elata	2.420
	SRR5643528	five period of Gastrodia elata	3.260
	SRR5643658	five period of Gastrodia elata	1.830
	SRR5643659	five period of Gastrodia elata	3.080
	SRR5643660	five period of Gastrodia elata	3.040
	SRR5643661	five period of Gastrodia elata	4.660
	SRR5643662	five period of Gastrodia elata	3.260
	SRR5643663	five period of Gastrodia elata	3.680
	SRR5643664	five period of Gastrodia elata	2.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.080
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.890
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.460
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.610
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.560
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.220
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.930
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.660
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.050
SRP279888	Gastro	Gastrodia elata tuber	3.12
	Juven	Juvenile tuber	2.37
	Mother_Gastro	Mother tuber of Gastrodia elata	5.35
	Mother_Juven	Mother tuber of Juvenile	3.07