Gene detail

Detail information of GWHGAAEX013874/evm.TU.scaffold_54.80

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743764016\|ref\|XP_010912210.1\|	3.27E-150	PREDICTED: uncharacterized protein LOC105038190 [Elaeis guineensis]
trEMBL	tr\|M5X1W1\|M5X1W1_PRUPE	8.00E-133	Uncharacterized protein {ECO:0000313\|EMBL:EMJ20067.1}
TAIR	AT3G23160	1.00E-102	Protein of unknown function (DUF668)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	2190693	2193060	+

Transcript Sequence
>GWHTAAEX013874 GTTTGTAGAAGGAGCGTAGAAGCTACGGAGCTACTTTGATGGGATCAGAAGCGCTGCCATTTGTCTCCCTCGCCTCAACTGTTCTTCACCGATCCCATTTGCCGCCTTTGTTCTCTCTCTTTTGTATAAATCCCACTCTGCATTTCATTGAAAAAATTTCTACGATACATTGTCTCCAATCATGGCGAAGCCATGGATGCTGTTCCTGAGAGGTCCGGTCAAGAAGCACAGGACCGTCGGCGTCCTCACCTTCGAAATCTCTATCCTCATGTCCAAAACCATCGATCTGTATCAGTCCCTCGATGAAGATCGGATCGCGAATCTCAGAGACGAAACCCTAAATCTCGAAGGCGTGAGAAAGCTCGTCTCCGATGAAGACGATTTCCTCCTCGCCCTTGCCTTAGCCGAATCCATCGAATCCGTCCATCTCCTCTCCCGCGCCGTCTCCCGCCTCGGAACCCGCTGCTCCGATCCCATCTTCCGCAGATTCGACCGCGTCTTCGACGATCTGATCAAGAACGACTCCGATCTCCGCGGCCTCCTCGAGTATCCCAGCGGGAAGAAGGCGGTCCTCGAGATCAAGAGGATGGAGAGATTCGTCGCTGCGAGCTCCGATTTGTATCGGGAGCTCGAAGCCCTGGCCGATCTGGAGAGCGATCTGCGGAGGATCAAAGCGATTCCAGAGCGGACCATTCTTGGCGCCAATTTCGCGGCGTTCAGAAAACGGGTTTTGTGGCAGAGGCGGGTGGTGAAGAAACTGCGGGATGCTTCCGTTTGGAATCGGGACTACGATTTCGTCGCAATGCTCCTGGCTCGGGCATTGTTCTCCATTGTAGCCAGGATTAAGCTTGTATTCGGATTTCGTTCCGAGAAAGAAAAATCCACAGGACGCCTCTCCGGCATCTACTACTCTGTAAGTGGGTTGCTGCAGCCCTCCCTCCACTCAAATGTAAGAAGGATAAGAAGAAAAGTATTTGCTTCAGGTCCTCTCAGGAGCAATAGCGCCGCAGATACCGGTAAGAATCATCCCCGGCAAGGAATTTGGGGGCACTTCTCAAAATCCAGCAAGGGATCGATGGTCCAAGATAACATTTTATCATGGCATTCGATTATAGTTAGAGATGGGGAAGAAAAAGAAGAAGAACTGAAAGACACCATTTTGAACACGAAGAGCTTATCTCTGGTTTTCTCAGAGCCCAGAAGAAGGTTTCTGAAGGCTCTTCCTTCGACTCTGGGCGCCGCCGCTTTGGCTCTGCACTACGCAAATGTGATCATTGTGATTGAGAAGCTCTCAGCCTCACCGAATTTGATCGGGATGGAAGTGAGGGATGAGCTTTACAGCATGCTGCCATGGAGCGTGAGGGCATCTCTGAGGCTGAGGCTGAGTTCCTATGCAAAGAATTTGGGCTCCTCTGTCTATGATCCGGCTCTTGCAGAAGAGTGGAGGGAAACCATGAGAAGGATTTTGGAGTGGTTGGCTCCCCTTGCGCATAATATGATAAAGTGGCAGTCAGATAGGAGCTTTGAGAAGCAGCATTTGGTTTCAAAGACAGATGTTCGTTTGATTCAGACTCTTTATTATGCGAATCAGGCGAAGGCTGAAGCAGCAATAACAGAGCTTCTTGTGGGTTTGAACTATCTGTGGAGGTATGGTAGGGAGCTCAAAGCAAAGGCTCTTCTTGGTTGTGCAGGAAGCAGAAGTTTAGTGGCTGCTGGAAGAAGGAGAAGAGGACAAAGAGAGTGATCTATTTTTTTTGGATAAATAGAACTGGTCCTGCTGATTTGCAATATAAACAGAACATACGGGAGATTTTGCCACCTGAATAATCAAGGTGTTTGATTTTAACCGGAGACAGATGACTGCAAAGGTTTGAGGCTTCTTCTGTCATGAAGAGTACTGCGTCATAGTAATTAGGCTATAGCCAGCTACAGTAATGCCGCAATATATCCAAAGGGGACTGCTACAGTGTTCAGCCAGGGACCCAAAAAACTTGTAATGCCATTTTTGCGCATGGATGGGATTAATCCGAGGCTGAAGTATTGTTTTCTAACGTTGTTTTAGGCTTACGTGTGGAGAAGGGTAGCTTTTCTCATATATAAATTGCTACACTAATTGAACCTTCAGCTCCTACTTAAGCGATGCATATGTCTATTATGGGATTTTCCTTGTAAAAATTAGGAAGGGCTTCTTTAGTTAAGCTTTGCTTAGCTTAAGCTGAGCTTAAATGTCACACTCTATTTACCA

Network for GWHGAAEX013874

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11961.7	DUF3475	21	76	3.30E-20
PF05003.11	DUF668	350	441	2.60E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.890
SRP064423	SRR2545915	Juvenile tuber	0.800
SRP108465	SRR5643513	five period of Gastrodia elata	2.320
	SRR5643514	five period of Gastrodia elata	2.710
	SRR5643515	five period of Gastrodia elata	1.840
	SRR5643524	five period of Gastrodia elata	1.840
	SRR5643525	five period of Gastrodia elata	1.720
	SRR5643528	five period of Gastrodia elata	2.300
	SRR5643658	five period of Gastrodia elata	1.370
	SRR5643659	five period of Gastrodia elata	0.620
	SRR5643660	five period of Gastrodia elata	0.400
	SRR5643661	five period of Gastrodia elata	0.530
	SRR5643662	five period of Gastrodia elata	0.740
	SRR5643663	five period of Gastrodia elata	0.310
	SRR5643664	five period of Gastrodia elata	0.770
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.040
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.930
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.550
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.380
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.100
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.930
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.570
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.130
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.870
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.870
SRP279888	Gastro	Gastrodia elata tuber	1.28
	Juven	Juvenile tuber	1.73
	Mother_Gastro	Mother tuber of Gastrodia elata	2.53
	Mother_Juven	Mother tuber of Juvenile	1.66