Detail information of GWHGAAEX013876/evm.TU.scaffold_54.83


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41971.00E-89FOG: PPR repeat
nrgi|731910939|gb|AIZ68165.1|1.11E-123pentatricopeptide repeat superfamily protein, putative isoform 1 [Ornithogalum saundersiae]
Swissprottr|Q0WMN5|Y3913_ARATH5.00E-61Uncharacterized protein At3g49140
trEMBLtr|M0SYX8|M0SYX8_MUSAM2.00E-103Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P15990_001}
TAIRAT5G240601.00E-89Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005922810582317232+
Transcript Sequence

Network for GWHGAAEX013876

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms52.560
SRR2545915Juvenile tuber49.560
SRP108465SRR5643513five period of Gastrodia elata21.310
SRR5643514five period of Gastrodia elata22.450
SRR5643515five period of Gastrodia elata24.530
SRR5643524five period of Gastrodia elata20.600
SRR5643525five period of Gastrodia elata23.040
SRR5643528five period of Gastrodia elata20.220
SRR5643658five period of Gastrodia elata27.220
SRR5643659five period of Gastrodia elata30.850
SRR5643660five period of Gastrodia elata35.620
SRR5643661five period of Gastrodia elata32.940
SRR5643662five period of Gastrodia elata40.220
SRR5643663five period of Gastrodia elata39.760
SRR5643664five period of Gastrodia elata41.200
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_133.470
SRR6049655Rhizomagastrodiae_C368-T10_good_131.680
SRR6049656Rhizomagastrodiae_C368-T07_good_130.850
SRR6049657Rhizomagastrodiae_C368-T07_good_136.730
SRR6049658Rhizomagastrodiae_C368-T04_good_136.090
SRR6049659Rhizomagastrodiae_C368-T04_good_138.870
SRR6049660Rhizomagastrodiae_C368-T01_good_130.750
SRR6049661Rhizomagastrodiae_C368-T04_good_126.490
SRR6049662Rhizomagastrodiae_C368-T01_good_129.050
SRR6049663Rhizomagastrodiae_C368-T01_good_128.360
SRR6049664Rhizomagastrodiae_C368-T10_good_126.860
SRR6049665Rhizomagastrodiae_C368-T10_good_126.860
SRP279888GastroGastrodia elata tuber 44.33
JuvenJuvenile tuber34.01
Mother_GastroMother tuber of Gastrodia elata 27.00
Mother_JuvenMother tuber of Juvenile 30.43