Gene detail

Detail information of GWHGAAEX013878/evm.TU.scaffold_54.85

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|269123195\|ref\|YP_003305772.1\|	2.00E-89	pyruvate kinase [Streptobacillus moniliformis DSM 12112]
KOG	KOG2323	0	Pyruvate kinase
nr	gi\|743763988\|ref\|XP_010912195.1\|	0	PREDICTED: pyruvate kinase, cytosolic isozyme-like [Elaeis guineensis]
Swissprot	tr\|Q42806\|KPYC_SOYBN	2.00E-132	Pyruvate kinase, cytosolic isozyme
trEMBL	tr\|M0RIG6\|M0RIG6_MUSAM	0	Pyruvate kinase {ECO:0000256\|RuleBase:RU000504}
TAIR	AT3G52990	0	Pyruvate kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	2331970	2350667	-

Transcript Sequence
>GWHTAAEX013878 CAGAATTCGTCGTGTAAGGTCAAAAACAGCGGAACCACGCAATAAAGCGATTGACAAATTCTGTCTCTTCAGTCATAAGAGGCAGAACCAACGAGCGGTGCGGAATAGAAATAGTGCGATCGATTTGCGCAGAAAGTCGTAGTTGCCGTCTTCCTCCGATCCTCCTCTGCCTCTCTCTTTATCGTCGATCACTGGTTTATTCCCGGAGGACTGCGAATCTAGCGAGAAGATGCATTCAACAAACCTACTTCTCGAAGAGCCCATCAGGATGGCATCTATTCTCGAGCCATCCAAAACCAGTTTTTTCCCTGCGATGACCAAAATCGTAGGAACGCTCGGTCCTAAGTCGCGATCTGTGGATGTTATTTCAGCTTGCCTCAAAGCAGGAATGTCTGTGGCGCGTTTTGATTTCTCCTGGGGAGACGTGGATTATCACCAGGAAACTTTGGAAAACCTCAAAATGGCTGTGAAGAGCACCAAAAAGCTGTGCGCTGTAATGCTGGATACAGTTGGGCCTGAGCTACAGGTTGTTAATAAAAGTGGAAATGCTATTTCACTTGTAGCAGATGCAACGGTAGTTCTCACTCCTGACCAAGATAAAGAAGCATCCTCTGAACTGTTGCCAATTAATTTTACTGGACTAGCTAAGGCAGTTAAGCCAGGAGATACTATATTTATTGGTCAGTACTTGTTCACTGGAAGTGAGACGACTTCAGTTTGGCTGGAGGTACTTGAGACCCAAGGAGATGATATCACCTGTGCTATAAAAAACACTGCAACTTTAGCGGGGTCTCTCTTCACCTTGCACATTTCTCAGGTTCACATTGATTTGCCCACACTTTCTGAAGCTGACAAGGATGTAATCAGCACTTGGGGTATCAGAAATAAAATTGATTTCCTATCACTCTCTTATACAAGGCATGCAGAGGATGTTCGGCATGCTCGTGACTTTTTATCAAACTTGGGTGAGCTGCAACAAACTCAAATTTTTGCAAAAATTGAAAACATTGAAGGGTTAACACATTTTGATGAAATTCTTCAAGAAGCAGATGGTATCATTCTTTCTCGGGGAAATCTTGGAATTGATCTTCCACCTGAGAAGGTATTTTTATTTCAGAAAGCAGCTGTATACAAGTGTAATACTTCTGGAAAACCTGCTGTGGTCACTAGAGTGGTAGACAGCATGACTGACAACCTCAGGCCAACTCGTGCGGAGGCAACTGACGTGGCCAATGCTGTCCTCGATGGGACCGATGCAATTCTTCTGGGCGCTGAAACTCTCAGAGGTTTGTACCCTGTTGAAACTATAACCACAGTTGGTAAAATATGCGCGGAGGCGGAGAAGGTTTTCAACCAAGATCTATATTTTAAGAAGACTGTAAAATATGTCGGAGAGCCGATGTCGCATCTGGAGTCGATTGCTTCATCTGCTGTGCGTGCCGCCATTAAAGTTAAGGCCTCTGTCATTATCTGCTTTACTTCATCTGGAAGAGCCGCTAGGCTTATTGCGAAATACAGGCCAACAATGCCCGTCATATCTGTCGTCATTCCTCGGCTCAAAACGAACCAATTGAGATGGAGCTTCACCGGTGCTTTTGAGGCAAGGCAGTCTCTCATTGTTAGAGGCCTTTTCCCAATGCTTGCTGATCCCCGGCATCCTGCTGACTCCACAGGTGCTACCAACGAATCAGTTCTTAAGGTTGCGCTGGAATACGGGAAGGCGTCGGGTGTGATAAAGTCACATGATCGAGTGGTTGTTTGCCAGAAGGTGGGGGATTCTTCTGTGGTGAAGATCTTAGAGCTCGAAGATTGAGCCTCTCATCTCCTCTCTGCTCACCACTGGTATAAATTTTGAGTCTCACTGCTGTTTGCTAGACAGCTTCTTTTTGCAGTTAATTTTGTGCTTTAATTTATCAACTTCTGGCTTTTCTTTCCTTTTTTTTAAAAGAGGAATTAATATACTCTGAGAGTGAGGCTCTCGAGTTTGGTCAATCATTAACAATAATATTTTTGTGGAAACCCCTTCTTTTAATAATTCGCACCTTTGGCATTGCTTTTTGTTTGTTTTGTTTCTGCTATATAGAATTTTTATGCTGTTGAGAGGAAGATGTGTTACACTGTCATGCCAATTTGCTTGAGGTATGTTACACTGTAAATAACTTGCTACGAACTGTTAAACTTTAAAATAAGAAAT

Network for GWHGAAEX013878

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00224.20	PK	30	375	6.00E-95
PF02887.15	PK_C	395	518	1.20E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00873	PK, pyk	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of antibiotics	map01130
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Pyruvate metabolism	map00620
		Purine metabolism	map00230
		Glucagon signaling pathway	map04922

Gene Ontology

GO term	Ontology	Name
GO:0006096	Biological Process	glycolytic process
GO:0003824	Molecular Function	catalytic activity
GO:0000287	Molecular Function	magnesium ion binding
GO:0030955	Molecular Function	potassium ion binding
GO:0004743	Molecular Function	pyruvate kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	138.330
SRP064423	SRR2545915	Juvenile tuber	119.590
SRP108465	SRR5643513	five period of Gastrodia elata	154.410
	SRR5643514	five period of Gastrodia elata	231.530
	SRR5643515	five period of Gastrodia elata	163.620
	SRR5643524	five period of Gastrodia elata	205.330
	SRR5643525	five period of Gastrodia elata	98.580
	SRR5643528	five period of Gastrodia elata	155.400
	SRR5643658	five period of Gastrodia elata	86.570
	SRR5643659	five period of Gastrodia elata	126.710
	SRR5643660	five period of Gastrodia elata	120.240
	SRR5643661	five period of Gastrodia elata	141.750
	SRR5643662	five period of Gastrodia elata	149.570
	SRR5643663	five period of Gastrodia elata	150.560
	SRR5643664	five period of Gastrodia elata	127.130
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	197.260
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	227.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	218.560
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	138.920
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	178.520
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	165.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	148.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	163.620
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	327.960
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	257.910
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	347.600
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	347.600
SRP279888	Gastro	Gastrodia elata tuber	156.44
	Juven	Juvenile tuber	287.53
	Mother_Gastro	Mother tuber of Gastrodia elata	146.90
	Mother_Juven	Mother tuber of Juvenile	266.56